Gene Huta_0915 details

Gene Information

• Locus tag: Huta_0915
• ID: 8383188
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhabdus utahensis DSM 12940
• Kingdom: Archaea
• Replicon accession: NC_013158
• Strand: +
• Start bp: 883981
• End bp: 884658
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 644971979
• Product: Bacterio-opsin activator HTH domain protein
• Protein accession: YP_003129831
• Protein GI: 257051998
• COG category: [R] General function prediction only
• COG ID: [COG3413] Predicted DNA binding protein

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCATGG CGTTGCGTGC GACCTACGAG ATCACGTGCG AGCACCTGCC GTTCGTCTCG 
GTCGCGGCCA GCGTGCCCGA GGCAACTCTG TCTGTGCAAC TCGTCCCCAG CCAGGACGAG 
TACACATCGT TCGTCGTCAC GGTCACCGAG GGACCGGTGT CAGCCCTCAA AGACGCGTTC 
GAAGACGCAC CGTTCGTGGC CGGGTACACC CGTCTCAACA AGTCCGCTGA TCCACCGCGA 
TACAAAGTGT TGCCGGATCT CAGCATGAGC GACCAGTTCC CCGCGGACTT CGACGTGGGT 
GGGCTGAAAG CCCTGGCCGA CACCGATTCT CTTGTCGATG AGATCCAGGC GACAACAACC 
GGCTGGATAC AGTCCGGTCA GTTCGCCGAC CGGGAAACAC TCGCTGAGTT TCAAATGTTC 
TGGGAGCGCC ACGGTGGCTT CGATCTCCGC CGGATCGAAT CCACTTCACG CCCTCAGGCG 
GGAGCTGACG GGCTAACCGA TCGCCAACGC GAGGCGCTCC TCGCGGCCGC TGAAATGGGC 
TATTTCGACG TGCCAAGGGA CGCATCGCTG GCTGATGTTG CAGCCGACCT CGATATCAGC 
GCGTCTTCGC TCTCCGAACG GCTCCGACGA GGCCAACTCG CACTGATCGA GACGCACCTC 
GACAGGTCGG AAACTTGA 

 

Protein sequence

MFMALRATYE ITCEHLPFVS VAASVPEATL SVQLVPSQDE YTSFVVTVTE GPVSALKDAF 
EDAPFVAGYT RLNKSADPPR YKVLPDLSMS DQFPADFDVG GLKALADTDS LVDEIQATTT 
GWIQSGQFAD RETLAEFQMF WERHGGFDLR RIESTSRPQA GADGLTDRQR EALLAAAEMG 
YFDVPRDASL ADVAADLDIS ASSLSERLRR GQLALIETHL DRSET