| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_0436 |
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| Symbol | |
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| ID | 8382703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhabdus utahensis DSM 12940 |
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| Kingdom | Archaea |
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| Replicon accession | NC_013158 |
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| Strand | - |
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| Start bp | 428686 |
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| End bp | 430185 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644971498 |
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| Product | TraB family protein |
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| Protein accession | YP_003129356 |
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| Protein GI | 257051523 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1916] Uncharacterized homolog of PrgY (pheromone shutdown protein) |
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| TIGRFAM ID | [TIGR00261] pheromone shutdown-related protein TraB |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGACA CGGTCGATCC ACCGGAACCG TCCGGGGCCG GTGGCGAGGG CTCGGTCCAT
CTTCTCGGGA CGGCACACGT CTCGGCGGAG AGCGCCGAGC GCGTCGAGCG GACGATCGAG
GACGAGCAAC CCGATGTCGT CGCCGTCGAA CTTGACGAGG GACGCTATCG ACAGCTCAAA
GGCGAATCAC CCGACGATAT CGAGGCGAGC GACCTTCTCG AAGGGAACAC TGTCTTTCAA
TTCCTGGCGT ACTGGATGCT GTCGTACGTC CAGGCCCGGC TCGGCGACCG CTTCGACGTG
ACGCCCGGCG CGGACATGAT GGCCGGCGTC GAGACGGCCG AAGCGGCGGG TATCGACGTC
GCGCTGGTCG ACCGGGATAT CCAGACGACG GTCCAGCGGT TCTGGAAGCG ACTGACTGGC
CTGGAGAAAC TCAAGCTCTT CGGCGGGATG CTCGCCGGCA TCGGTGGCCC ATGGGCCGCA
GCCTGGACGG TCGGCCTCAT GGTCGGGCTG TTCGTCGGCA TCCTCGGCTC CGCGCTTGGC
GTTTCAGTCC TCGGGGCCGT CGGTCTCTCG GTTCCGTTTG CCAGTGCAAT CGACGTTCTC
CTCCTGGCTG GCGGTGTCGG GACGGTGATC GCCCTCCCGC TGTTGGCCGC ATTCTCGGGA
TTCGAAGACG AGGACGTCGA GGAGTTCGAC ATCGAACAGT TGACCGACAC TGACGTCGTC
TCCGCGATGA TGGAGGAGTT TCGGCGGTTT TCGCCGGGCG GTGCCGAGGC ACTGATCGAC
GAGCGGGACG CCTATATCGC CCACCAGCTC GTGGGGCTCC GGGAGGCGGG GGCCGATGTC
GTCGCCGTGG TCGGGGCCGG CCACCGTGCG GGGATCCAGG GCTATCTGGA CAACCCCGAA
ACGCTACCGC CGATGGATTC ACTGACAGGG ACGATTTCCG GCCGGCGGTT TTCACTCTAC
AAGATCCTTG GGTATCTGTT CACGCTCGGG TTCGGGGCGT TCTTCGTTTT GCTGCTGCTT
GGCGGCGCTA ATCAGGGTTG GTTGCTCAGG CTGTTCGCAG CGTGGTTCCT CGTCAACGGC
ATCATCGCGG CTGCGCTGGC AAAGGTAGCC GGCGCACACT GGAGCAGTGC GGGCGTCGGC
GGTGCGGTCG CCTGGCTGAC GAGCGTCAAC CCACTGCTCG CCCCGGGCTG GTTCGCCGGC
TACGTCGAGT TGCGCTATCT CGATGTCAAC GTCTCGGACA TCAGCCGGCT CAACGAGTTG
CTCGACGATC AGGAGCTACC GATCCCCGAA CTGGTCGCCA GGATGCGGGA AGTGCCGCTA
TTCAGGCTCA TCCTGATCGT CGCACTCACG AATATCGGGA GCTTCATCGC GAGTATGCTG
TTTGCGAGCA CGATCCTGCC ACTCATGTCC AACGAGGTCG GTGGCGTCGG CGAGGTCGCT
GAACTGCTGA TAATGGGTGC GCGGAACGGG GCTGAAATGC TCTGGAATCT CGTCGGATGA
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| Protein sequence | MSDTVDPPEP SGAGGEGSVH LLGTAHVSAE SAERVERTIE DEQPDVVAVE LDEGRYRQLK
GESPDDIEAS DLLEGNTVFQ FLAYWMLSYV QARLGDRFDV TPGADMMAGV ETAEAAGIDV
ALVDRDIQTT VQRFWKRLTG LEKLKLFGGM LAGIGGPWAA AWTVGLMVGL FVGILGSALG
VSVLGAVGLS VPFASAIDVL LLAGGVGTVI ALPLLAAFSG FEDEDVEEFD IEQLTDTDVV
SAMMEEFRRF SPGGAEALID ERDAYIAHQL VGLREAGADV VAVVGAGHRA GIQGYLDNPE
TLPPMDSLTG TISGRRFSLY KILGYLFTLG FGAFFVLLLL GGANQGWLLR LFAAWFLVNG
IIAAALAKVA GAHWSSAGVG GAVAWLTSVN PLLAPGWFAG YVELRYLDVN VSDISRLNEL
LDDQELPIPE LVARMREVPL FRLILIVALT NIGSFIASML FASTILPLMS NEVGGVGEVA
ELLIMGARNG AEMLWNLVG
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