| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_7061 |
|---|
| Symbol | |
|---|
| ID | 8363253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8835008 |
|---|
| End bp | 8835901 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644969194 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003126663 |
|---|
| Protein GI | 256426010 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.505096 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAACTA TTCTATCCCT TAACAACATT TCAAAGCGGT ACGGACACGT ACAGGCGCTG
GACGGCGTAT CATTTGATAT TCCGGCAGGC AGCGTGTATG GTATACTCGG ACCAAACGGT
AGTGGTAAAA CCACGATGCT GGGTATTGTG ACCGACGTAC TGAAAGCGGA TGCCGGTTCT
TTCACCCTGA TGGAGCAGAC ACCTTCTGCC GCACAGCGCA GGAAGATCGG AACGCTGTTG
GAAACGCCTA ATTTCTATCA CTATCTGTCG GCGTATAAAA ACCTGCAGAT AGTCGCTAAT
ATCAAACAGA CAAGCGAACA GGATATTCCC CGGGTGCTGG AACTGGCCGG ATTAGTGGCC
AGACAGCACT CGGCTTTTAA GACTTACTCC CTGGGTATGA AACAGCGGCT GGCTATTGCA
GCAGCAATGC TGGGCGATCC GGAGGTCCTG ATACTGGACG AACCTGCCAA TGGGCTGGAT
CCGGTAGGGA TTGCAGAGGT GAGAAATCTG ATCCGCCAGC TGGCACAGTC GGGTAAGACC
ATTATTATGG CCAGTCACCT GCTGGATGAA GTGGAAAAAG TTTGTACACA TGTGGCTATC
CTGCGGAAAG GGAAGTTGTT GGGTTCAGGT CCGGTGAACG CAGTCCTGTC CAGGGATAAT
TTTATCGAGA TCGGCGGGCC TGATAATCAG GCACTGTCAC AGCTGATAAA ACAGCATCCG
GCCTTTGTAC AGGTATTGCC TGGTCAGGAC GGTATTTTGC AGGTCACTTT CCGCGAAACG
ATTGATCCGG CAAGCCTGAA CAGCTGGTGC GCACAACAGG GCGTCTGGCT GAGTCATCTC
CAGATGAGCA GAAAGAGCCT GGAAACGGCA TTCCTGGAAT TAACCAACAA CTAA
|
|---|
| Protein sequence | MSTILSLNNI SKRYGHVQAL DGVSFDIPAG SVYGILGPNG SGKTTMLGIV TDVLKADAGS
FTLMEQTPSA AQRRKIGTLL ETPNFYHYLS AYKNLQIVAN IKQTSEQDIP RVLELAGLVA
RQHSAFKTYS LGMKQRLAIA AAMLGDPEVL ILDEPANGLD PVGIAEVRNL IRQLAQSGKT
IIMASHLLDE VEKVCTHVAI LRKGKLLGSG PVNAVLSRDN FIEIGGPDNQ ALSQLIKQHP
AFVQVLPGQD GILQVTFRET IDPASLNSWC AQQGVWLSHL QMSRKSLETA FLELTNN
|
|---|
| |