| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6914 |
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| Symbol | |
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| ID | 8363106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 8657959 |
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| End bp | 8661651 |
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| Gene Length | 3693 bp |
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| Protein Length | 1230 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644969047 |
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| Product | PKD domain containing protein |
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| Protein accession | YP_003126516 |
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| Protein GI | 256425863 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3291] FOG: PKD repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.791175 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAATTTTA CTTTCCCTAT AGGCTGCTTA GCTTTCCTTT TTTCGCTGTT TTCAGGCGTG
ACGGCTAGTG CACAGGCGCA GGTACAGGAA TTTTACGATA ATAAACCGCT TCAGTTCACA
GAAAATAAAG GACAGTGGAA TGGTGATTTC CTTTATAAGA CTGATATGGG CGGAGGCGCT
GCTTTCCTGA AGCGCACTGG TTTTACGTTC TTGTTGCAGG ACAAGCAGCA GCGTTACGCA
CTCGCTGAAA AAATGCATGG ACATTCCCAT GGTGGTGGCG ATACCACCTG GCATCATGAT
CCGAGTCCAC GGAATGACAA CGCACGTACT TCAGCTGCTG CCGGCAGTAC TGAAAACTCT
GGTGGAGAAA ACGTTGACGT TCCGGTTCCC ACAGTACGTG GACATGCTTA TGAAGTGACA
TTTCTGAACG CAGGTAACCC GGAAATATCT GCTGAAAAAG CGTCAGAAAC ATATTACAAC
TACTTTATCG GAAATGACCC TACAAAATGG CAGTCCAATA TTAAGTCTTA TCAGTTAGTG
AACTACAAAG GCTTATATCA CGGTATTGAC ATGCAGGTTT ATTCAGAAGC TTCCGTATTG
AAATATGATC TGATCGTGCA GCCAGGAGCA GATCCTTCCC TGATACAGCT GCAGTACACC
GGTGCAGACA AACTGGAGAT CAAAAAAGAA CAGCTGATCA TTACCACTTC AGTAGGTACT
GTTACAGAAC AGATGCCGTT TGCTTATCAG TATATTGATA ATCAGCGTGT ATCCGTAAAA
GTGTCTTATG TGCTGAACGG TCAGAAACTG CGTTTCAAAG TATCCGGTAA GTATGATGAC
AATTATCCCC TGATCATCGA TCCTTCTTAT ATCTTCTCTA CAGTATCCGG TTCTACTGCC
GACAACTGGG GTTTCACCGC TACTTATGAC GGTGCGGGTA ACTTCTATGG TGGTGGTATC
GTGTTCAATG TGGGGTATCC GGTTACACCG GGCGCTGTGC AGAGCACTTA CGCGAATGGT
GGATTTGATA TTGGTATCAG TAAGTTTTCC TCTAATGGAC GTAATCTGCT TTATGCTACT
TATATCGGTG GTGGCGGTAA AGAACAGCCT CATAGTCTGT TCGTAGATCC GGCAGGTAAC
CTCGTGATTT CCGGCAGGAC TAATTCAGGT AACTATCCGG GACCTAACCG CGGACAACCG
ACATTAGTAG GTACACGTGG CGGATGGGAT ATTGCTGTAA CAAAACTGAA TGCAACCGGT
ACGGGTATTA TCGGATCTAT GATTGTTGCC AGTCCGGGAG ATGATGGTAT GAACATGCGG
GAAGACAGAA CACTGGGTGC TTCTGTGTTG CTGCGTAACT ATGGCGATGA TGCCCGTAGT
GAAGTGGTGA TAGATAATGC CGGAAATATT TATGTGGCCA GCTGTACCCG TTCTGACAGA
TTCCCTGTTA CAGCAGGGGT TTTTCAGTCC TCCTTTGGTG GCGTGCAGGA TGGTGTGTTG
CTGAAAATAG ATCCAAACTG TGCAAACCTC TTATGGGCAA GTTATATCGG TGGTAGCAGA
GAAGATGCTG CTTACGTACT TGCCTTGAAC GGAACCAATA CGATATATGT GGCAGGTGGT
ACCGCCAGTA ACAACTTCCC GATCAGAGGT AATCCTTTGT ATGGGACTTA CAGGGGTGGT
ATCTGTGATG GTTTTATTGC GCATGTCAGT GCAGATGGCG CTACATTGTT ACAGAGTACT
TACCTCGGAG CAAATACGGT TGCAGCAGAT CAGGTATATG GTATCCAGCT CGATTCCCGT
GGTTTTGTAT ATGTGATGGG TACGACAGAA GGTACCTGGC CGATCGTTCA ACCAACAGGG
ACTACAACAT TTTATAACAA CGATTCAAGA CAATTCATAG CGAAGCTGCA ACCTAACCTT
TCTGCTTTCG TATACTCTAC GACGTTTGGT AAGGCCGCTT CGACACCAAG TATTTCTCCG
GTGGCCTTCC TGGTGGACCG TTGTGAAAAC GTGTATGTGT CCGGATGGGG TGGCGGTATC
GATGTACAGC TGCATTATCC GAACTCAAAT ACAGGAGGTC TGCCATTAAA AAATCCATTG
CAGCGTACAA CAGATACACA GGATTTTTAC TTCTTCGTAT TACAGCGTGA TGCAACCGAT
ATCCTGTTTG GTAGCTACTT TGGAGGTAAC GGTACCTATG AACACGTAGA TGGCGGTACC
AGCCGCTTCG ACCGTAATGG TGTAATCTAT CAGGGTATCT GCGCATGGTG TCCTACATCC
GAGTCTGGTT TCAGACCGCG TTATCCGACC ACCCCGGGTG CTTATGCTAC CAGTGCGCCG
CCAAACTGTA ACCTTGGGGC ACTCAAAATC GCTTTTAATC TGGATGGTGT AAAAGCAGGT
ATCAAAACAC TGGAAAGAAG AACCAACTAT TGCGTACCGG CTACGATTGA ATTCATTGAT
ACAACAGGTA CACCGGCACA GACATGGACC TGGAATTTCG GTGATGGTTC TGCGCCGGTA
GTAGGTACAG CCGATACAAC CCGTCATACT TATCAGAATG CCGGCAATTA CAGGGTAACA
TTAGTCAAAT GTGATCCTGC CAGCTGTAAC GGATGTGATA CGGCTTTCCT GGATCTGCGT
ATCCGTACCG ACAGAGCTAC TTTTGATATG GAAGCGGTAC GTCAGCCGCC ATGTGAAGCA
TTGAGTTATC AATTTAATTT CACAGCACCT ACACCGCCAA GACCATTTAC TTCAACTTCG
TTTGACCTGA ACTTTGGGGA TGGTACACCG ACAGTAAAAG TAGGTCCGAA TGACTTCCCA
TATCTGCACC GTTATCAGGC AGAAGGTGTG TATAACGCCA CGCTGACACT GGTAGATACC
AACTATTGTA ATGCACCTGA AATAGATACA GTGCCATTGC GTGTGGCTGC GAATGTGAGG
GCTTCTTTCA TTGCACCTGA CAGCACCTGC GTACCGGCGA CGATCGAGTT CCAGAATACA
ACAAGTGGTG GTGAAACATT CAGCTGGAAT TTCGGTGATG GAGGTACATC TACAGATGTA
AATCCGGTGC ACATTTACAA TACGCCAGGT GTCTATACAG TTACTATGCA GGCGGTTGAT
AACAATACCT GTAACAGGAC AGATGATACC TCAATGGTGA TCACTGTGTT TGCACCACCG
ACTGCAGACT TCACCTATTC ACCTACTACA CCGACAGAGA ATACGCCAAC TACTTTCAGT
AACCAGTCTT CTCCGGACGC GGTTAAGTTC CTCTGGGAAT TTGGGGATGG TGATGGCTCA
ACAGCAGTAA ATCCTGTATA CCAATACAAC AGGACCGGTG TATATGATGT ATATCTTATA
TCCACAAACA GCGCGGGTTG TTCGGATACA GCCCACAAGC AGGTGAGTGC TATCGTAATA
CCGTTGTTTG ATATTCCTTC AGCATTCTCG CCAAACAGAG ATGGCGTCAA TGATGTATTC
CTGGTAAGAG GATTTGGTAT CTCCAGGTTC AATATGAAGA TTTATAACCG CTGGGGACAA
ATGGTATTTG AAACAAATGA CGCTTTAATA GGATGGGACG GAACATTTAA GGGATCGCTT
CAACCTATGG ACGCCTATGC ATTTGTGATC AACGTAGAGT TTAGTGATGG TACTTCAGCT
ACTAAGAATG GAAGCGTAAC CTTGTTAAGA TGA
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| Protein sequence | MNFTFPIGCL AFLFSLFSGV TASAQAQVQE FYDNKPLQFT ENKGQWNGDF LYKTDMGGGA
AFLKRTGFTF LLQDKQQRYA LAEKMHGHSH GGGDTTWHHD PSPRNDNART SAAAGSTENS
GGENVDVPVP TVRGHAYEVT FLNAGNPEIS AEKASETYYN YFIGNDPTKW QSNIKSYQLV
NYKGLYHGID MQVYSEASVL KYDLIVQPGA DPSLIQLQYT GADKLEIKKE QLIITTSVGT
VTEQMPFAYQ YIDNQRVSVK VSYVLNGQKL RFKVSGKYDD NYPLIIDPSY IFSTVSGSTA
DNWGFTATYD GAGNFYGGGI VFNVGYPVTP GAVQSTYANG GFDIGISKFS SNGRNLLYAT
YIGGGGKEQP HSLFVDPAGN LVISGRTNSG NYPGPNRGQP TLVGTRGGWD IAVTKLNATG
TGIIGSMIVA SPGDDGMNMR EDRTLGASVL LRNYGDDARS EVVIDNAGNI YVASCTRSDR
FPVTAGVFQS SFGGVQDGVL LKIDPNCANL LWASYIGGSR EDAAYVLALN GTNTIYVAGG
TASNNFPIRG NPLYGTYRGG ICDGFIAHVS ADGATLLQST YLGANTVAAD QVYGIQLDSR
GFVYVMGTTE GTWPIVQPTG TTTFYNNDSR QFIAKLQPNL SAFVYSTTFG KAASTPSISP
VAFLVDRCEN VYVSGWGGGI DVQLHYPNSN TGGLPLKNPL QRTTDTQDFY FFVLQRDATD
ILFGSYFGGN GTYEHVDGGT SRFDRNGVIY QGICAWCPTS ESGFRPRYPT TPGAYATSAP
PNCNLGALKI AFNLDGVKAG IKTLERRTNY CVPATIEFID TTGTPAQTWT WNFGDGSAPV
VGTADTTRHT YQNAGNYRVT LVKCDPASCN GCDTAFLDLR IRTDRATFDM EAVRQPPCEA
LSYQFNFTAP TPPRPFTSTS FDLNFGDGTP TVKVGPNDFP YLHRYQAEGV YNATLTLVDT
NYCNAPEIDT VPLRVAANVR ASFIAPDSTC VPATIEFQNT TSGGETFSWN FGDGGTSTDV
NPVHIYNTPG VYTVTMQAVD NNTCNRTDDT SMVITVFAPP TADFTYSPTT PTENTPTTFS
NQSSPDAVKF LWEFGDGDGS TAVNPVYQYN RTGVYDVYLI STNSAGCSDT AHKQVSAIVI
PLFDIPSAFS PNRDGVNDVF LVRGFGISRF NMKIYNRWGQ MVFETNDALI GWDGTFKGSL
QPMDAYAFVI NVEFSDGTSA TKNGSVTLLR
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