| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6900 |
|---|
| Symbol | |
|---|
| ID | 8363092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 8643170 |
|---|
| End bp | 8644207 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644969033 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003126502 |
|---|
| Protein GI | 256425849 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03519] Bacteroidetes-specific putative membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00019858 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.575893 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATGA CTTGTAGAAA ATTGTTAGTG GCACTGTGCC TATGCAGCAC ACAAACACTG
GTCGCGCAGG ATATACACCT GTCCCAGTTC TATGAGACTC CAATTTTACG TAACCCGGCC
CTGATCGGTT TATTCCATGG GGATTACCGT ATCCAGGCCG TATACCGGAA TCAGTGGAAC
AGTGTCACGA TTCCTTATCA GACAGGCGCT TTAAGCGCGG AGCTGAAATT TCCTGTAGGC
AATAGTGAGG ACTTTGTCAC GGCGGGACTT CAGTTCACCT ATGACCGGGC AGGTACTGCC
CGTTTACAAT CTGTACAGGT ATTGCCAGCT GTCAATTACC ACAAATCCCT GAGCCAGGAC
AGGAACATGT TCCTCTCTGT GGGCTTTACG GGCGGTATTG TACAGCGGCA GTTCGACCAG
AGCAAAGTGA CATTTAACAA CCAGTATACC GGCGGACAGT TTGATCCGAC GGCGCCTACC
GGCGAGGAAG GCCGGCTGGC CCTGAGAGGA TATTCCTACC TGGATGCCGG AGCAGGTCTG
AGCTTTAGCA GTAGTCTCGG AGAGAATGAA GACATTAATT ATTATATCGG AGCGGCTATT
TTCCACTTTA ACCGGCCAAA GCTGTCCTTT TATAAAGATG CGACGGTCGC GCTGGATCCA
AAGTTCACGG TCAATGCCGG TATTACCCTC CCTTTACAGG AGCGTCTGAA ACTGATCGCA
CAGTATAATG AGATTCATAT GGGAACCTAT GCGGAGTACC TGGGAGGTGC GTTACTGGGT
TATAGCCTGT ATGACGAGGG GCTGGAAAGT ACCCGGGCAT TTTACGTGGG CGCCTATATG
CGTTACAAGG ATGCGATCAT TCCTTCTTTC CGCCTGGATA TGGAAAAATA TGAGGTAGGG
TTCACTTATG ATGTGAATAT TTCCAGTCTG AAACCGGCTA CCAGTGGTTT TGGCGGCTTT
GAGGTGTCAT TGGTATTCAA AGGATTCCTG AACAGCCGTA ACAGCACAAT GGATGCTGTA
CACTGTCCAA GGTTCTAA
|
|---|
| Protein sequence | MRMTCRKLLV ALCLCSTQTL VAQDIHLSQF YETPILRNPA LIGLFHGDYR IQAVYRNQWN
SVTIPYQTGA LSAELKFPVG NSEDFVTAGL QFTYDRAGTA RLQSVQVLPA VNYHKSLSQD
RNMFLSVGFT GGIVQRQFDQ SKVTFNNQYT GGQFDPTAPT GEEGRLALRG YSYLDAGAGL
SFSSSLGENE DINYYIGAAI FHFNRPKLSF YKDATVALDP KFTVNAGITL PLQERLKLIA
QYNEIHMGTY AEYLGGALLG YSLYDEGLES TRAFYVGAYM RYKDAIIPSF RLDMEKYEVG
FTYDVNISSL KPATSGFGGF EVSLVFKGFL NSRNSTMDAV HCPRF
|
|---|
| |