| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6787 |
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| Symbol | |
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| ID | 8362979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 8498746 |
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| End bp | 8499588 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644968920 |
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| Product | Rhomboid family protein |
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| Protein accession | YP_003126389 |
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| Protein GI | 256425736 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.132625 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATACA TTGGTCTTAT TAACCTCTTA CTGATTGTTG TAAACATTGC AGTGTCTTAC
AAAGGACTAA AGGATCGTTC CTTTTTTAAT AAGTATTCGT TTGAAGTGGA TCGTATCCTG
ATTGAAAAGG ACTACAAGCG ACTGATCACC TCCGGTTTCC TGCATGTCAG CTGGATGCAC
TTGTTTTTCA ACATGGTATC GCTTTTTCTG TTTAGTAATA GTCTGGAAGT AAAGCTGGGA
CCTACGGCTT ACCTGACTTT ATATTTTGCC AGCCTGGTTG GAGGTAACCT GCTGTCCCTG
CTGATTCACC GGAACCATGG AGATTATAGC GCTGTAGGTG CTTCCGGGGC TGTTTGCGGG
GTTATTTTCG CATCTATTGC TTTATTTCCT GCTATGCGGC TGGGCTTCTT CGGGATCCCC
TTTTCCATCC CGGGATGGGC GTATGGGTCA TTATTCGTTT TATACTCCAT TTACGGGATC
AAGTCCAGGA GGGACAATAT CGGACATGAA GCACATATGG GTGGGGCATT GATCGGCATG
GTCGTGGCAT TGTGTATGGT ACCCGAAGGA ATTGCGGAAA ATTATCGCAC CATATTGTCT
ATTCTGCTCC CGGGCGCACT TTTCGTTTAC ATTATCGTTA AATGTCCGCA TATACTATTT
ATCGACAACC GGTATTTCAA AGCGCATGTC GGTGATTACG ATATGGACGA CAGGTATCAC
CTGGAACGTG CCGGTGAGCA GCAGGATCTT GATTACCTGC TGGAAAAGAT CCATAAACGT
GGTATGAAAA GTCTGACCAA AAAGGAGCGG GAAATGCTGA TGAAATACTC TGAAGAGGTA
TGA
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| Protein sequence | MAYIGLINLL LIVVNIAVSY KGLKDRSFFN KYSFEVDRIL IEKDYKRLIT SGFLHVSWMH
LFFNMVSLFL FSNSLEVKLG PTAYLTLYFA SLVGGNLLSL LIHRNHGDYS AVGASGAVCG
VIFASIALFP AMRLGFFGIP FSIPGWAYGS LFVLYSIYGI KSRRDNIGHE AHMGGALIGM
VVALCMVPEG IAENYRTILS ILLPGALFVY IIVKCPHILF IDNRYFKAHV GDYDMDDRYH
LERAGEQQDL DYLLEKIHKR GMKSLTKKER EMLMKYSEEV
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