| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6783 |
|---|
| Symbol | |
|---|
| ID | 8362975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8493877 |
|---|
| End bp | 8494758 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644968916 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003126385 |
|---|
| Protein GI | 256425732 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.64784 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAAGC AGCAAATTTA TTCTGTTCCC TCATTTCTGC TTCCGGAGAA TACCCGGAAA
GAAGAGATAC ATATACTGGC GCATCAGTTT ACGGACAGCC GGGTGAGAAG TAAAGTCACC
CTGGAACAAA ATCTTTTCAG CTTCCTGGTG GAAGGAGAGA AGCGGGTATT TTATGCGGAA
AAGCATGCTG TGATCAATAA CACACAGTTT GTACTGTTAT CATCCGGTAA CTGTATCATG
AGTGAGAAGA AGATCTCGGA AGAGGGTTTC TACAAGAGTG TGGTGCTTAC TTTTGAGTCG
GCTGCATTGA CAAGGTTCTT TTTGAAATAT CCGCATGTAT GTATTGAAAA GGATAATCAT
GACCGCACAG AAGAACCTTT TCTGGTGTTT GAGACGGACA GCTTTCTGCA GAACTTTGTG
CATTCTCTTT GTCTGATGGC TGCGTCAGGA AAACCGCTGC CTATAGACCT GAGGATACTT
AAATTTGAAG AATTGCTGTT GTATATGGCA GATCGTTATC CACAACAGCT ATTAAGTCTC
CGGGCAAATG TGAGCGGTCA CCAGGAAGAA GTGATGATCA GGAAATCGGC GGAGACGAAC
CTTTATAACA ACGTGACTAT CGAAGAACTG GCCTTCTTGT GCAATATGAG TCTGTCTACC
TATAAGCGGA AGTTTCAGAA AACATACGGT ACTTCTCCTA CGCGCTGGTT CCTGCAAAAA
AGGATGGAGC AGGCAGTGGG TATGTTATTG GTACAGCGCG AGAAACCCAG TGAGATCTAT
CATAAGCTGG GTTATGAAAA CCATTCCAGC TTTACACAAT CCTTTAAACA GGTGTATGGT
CTGACACCGA GTGAATACCA GCAACAAAAA CTGACCGTTT AA
|
|---|
| Protein sequence | MVKQQIYSVP SFLLPENTRK EEIHILAHQF TDSRVRSKVT LEQNLFSFLV EGEKRVFYAE
KHAVINNTQF VLLSSGNCIM SEKKISEEGF YKSVVLTFES AALTRFFLKY PHVCIEKDNH
DRTEEPFLVF ETDSFLQNFV HSLCLMAASG KPLPIDLRIL KFEELLLYMA DRYPQQLLSL
RANVSGHQEE VMIRKSAETN LYNNVTIEEL AFLCNMSLST YKRKFQKTYG TSPTRWFLQK
RMEQAVGMLL VQREKPSEIY HKLGYENHSS FTQSFKQVYG LTPSEYQQQK LTV
|
|---|
| |