| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6733 |
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| Symbol | |
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| ID | 8362924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 8433470 |
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| End bp | 8436766 |
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| Gene Length | 3297 bp |
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| Protein Length | 1098 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644968865 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003126335 |
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| Protein GI | 256425682 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00154569 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0819442 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTAA CTGCTATTCT GACCCTGGTA TTTTCACTCA ATCTGAGCGC CAGGTCGTAT
TCACAATCTG TTACCATTAC AGGCAAACAC CTCGCCCTTT ATGACATCTT CAACAGCATC
AGTAAACAGA CCGGCTACGA GTTTGTATAC GATGAGAAAA TGCTGAACGG TACAGGTACT
ATAGATATTA ACTTAAAAGG GGCCAGCATT GCAGCTGTAT TAGACAACTG CCTGAAAAAC
AAGCCGCTTT CTTATACTAT CACCGACAAG ATCATTGTCA TCCGTCCCAG AGCAGCCCGG
AAAGAAGCAG CTGTCACGGC TGAACAACCT GCTGCTCAGG TGGAAGGTAC TGTGGTGGAT
GGTGCGGGCC AGCCTTTGCC GAATGTTGCG ATACAGGTAA AAGGGACTAC CCGTGGCGTA
CTGACCGATG CAAAAGGTCA CTTCTCCATC CAGGTAGAAA GCACAGACGT ACTGGTGTTC
AACTATGTTG GTTATGACAA AAAAGAAGTA CCGGTAGGTA CACAGACCTC CCTGCAGATT
GTATTGCAGG AGTCTAACAA ACAACTGAAC ACAGTCGTGG TAACAGCGCT GGGTCTGAAA
AGATCTGAAA AGTCTATCAC CTATGCTACC CAGCAGGTGA GCGGTGTGGA GCTGACCAAA
GCAAAAGATC CAAACCTGAT GAACACCCTG AACGGTAAAG TAGCCGGTCT GAATATCTCT
TCCAGCTCTT CCGGTGTGGG TGGTTCTGCA AAAGTGATCC TGCGTGGTGC TAAATCCGGT
CTCGGTAGCA ACCAGGCATT ATACGTGATC GATGGGGTGC CAATGAACAA CTCCCTCACC
TCCCAGCCTA ACAGCTCTTA TGGTGGTAGC AGTTCCTACG ATGGTGGCGA CCCGATCTCC
AACCTGAACC CGGACGATAT CGAAAGCGTA TCCGTACTGA AAGGTGCATC CGCAGCTGCC
CTCTATGGTA GCCAGGGTGC AAACGGTGTG GTACTGGTAA CCACAAAAAG TGGTAAAGCC
GGTCGTACCA TTGTAAACTT CTCTTCCAGT CTGACACTGA ATACCGTTGC CTACAAACCT
GAATTCCAGA ACAGCTACGG TCAGTCTACC GCTACCAGCA CACAAAGCTG GGGTAGCAAA
CTGGCAGGTG GCGCACAGGA CAACCTCGGT TCCTTCTTCC AGACAGGTAA TAACCTGACC
AACTCTATCA GCCTCTCCGG TGGTACTGAT AAGATGCAGA CATATTTTTC TTATGCAAAC
ACCTCCGCAA AAGGTATTGA GCCTAAGAAT AAACTGTCCC GTAACAATAT CAGCTTCAAA
GAAACAGGGC ATTTCCTGAA TGATAAACTG ACTGCTGAAG CAGATGTAAA CTATATCACA
CAGACAATAG ACAACACACC GCTGAGTGGT TTCTATTTCA ATCCGCTGAC AGGTCTCTAT
CTTTTCCCTC GCGGTAAAGA TCTCGCACCA TATAAAAATG GTTTCGAAGT ATTTGACCCG
GCAAGACGCC TGATGACACA GAACTGGGCG TTCAATGAAG ACATTCAGCA GAACCCATGG
TGGATCGTAA ACCGTAACCA GAACTCTCTG GATCGTAACC GTTTATTGCT GAATGCAAGC
CTGAAATATG AAGTGAACAA ATGGCTGAAT ATCCAGGGCC GTGGAAGCAT CGACCGTATC
AATGACGTAT ACGATCAGAA AGTATATGCA GGTACCGTAA CTACACTGTC TCCTGCAAAT
GGTGTGTATA TCTATAGCAA CACCACTACC AGCCAGCAGT ATGGCGACGT GCTCGCTAAC
TTCAACATCC CGATCGGAGA CAAAATCCGT ATCACGGGCG TACTGGGTGG TAGCATCAGA
GACGTCATCA CCAAAGGTGA TAAATACAAC TCTGGTCAGG AAGGTCTGAA CATCCCGAAC
ATCTTCGTGC TGCAGAACTT CAAAGCAATC AACCCACTGA ATACAGGTAC CCTGCAGGAA
AACCATAGCC AGGTACAGTC TGTATTCGGT AGTGCCAACA TCTCTTATAA AGACTGGGCA
TATTTAGACC TGACTGCACG TAATGACTGG GCTTCTAATC TGGCATTCAC ACCATCAGGT
TCTTATTTCT ACCCTTCCGT AGGTCTGAAC GTGATCCTGA GCTCCGTAGC GAAACTGCCT
GAATTCATCA GCTTCGCGAA AGTACGTGGT TCCTTTGCAC AGGTAGGTAA CTCTCCGCTG
GCTTACCAGT CTAATCCTGC TGTATACACA TTCAGCGCAG GTGGTGGCTT CAGCATCAAC
CCATCCGCAC CATTCACTGA TCTGAAACCT GAAAAGACGA ACTCACTGGA GTTTGGTACT
GAATGGCGTT TCTTTGACAA CAGACTGAGT GCTGATGTTA CTTACTACAA AACAAACACT
AAAAACCAGA CATTACAGAT CAGAGCTCCT CAGGGTTCTT TCTATGATAA CTTCTTCATC
AATGCCGGTA ACATTCAAAA CCAGGGTGTG GAAGCAGTAG TACGCTATGA CGTACTCCGT
GACGGCAAAC TCAAATGGAA TACAGGTCTC AACTTTGCTA CCAACCAGAA CAGGATCAAA
GAACTGGCTC CTAACGCACC AGAATTTACA CTGAGCGGCG CATCCGGATC CAACTATGTA
TCCAAGTTCA AAGTAGGTGG CTCCTTCGGC GACATCTACG GTACCGTATT ACAGCGTGAT
GCACAGGGCC GTGTGATGAT CGATGCAAAT GGCAATCCAA TCAAACAGGG TGGTGACTTC
GTATATCTGG GTAACTCCAA TACCAGGTGG CAGCTTGGAT GGAACAACAA CCTGGAGTAC
AAAGACTTCA CCCTGTCTTT CCTGATCGAT GGCAAATTTG GTGGTAAGGT AATGTCTATC
ACACAGTCCG TGATGGACCA GTATGGCGTA TCCAAAGCAA CCGGCGACGC AAGAGATGCA
GGTGGTGTAG CAGTGAACGG TGTTGACCCT AACGGCAATG CTGTTTCTAT GGTAGATGCA
CAGAAATGGT ATTCCTCTGT AGGTGGTCGT GAGGCGGCTT CCGGTGAATA CATTTATAGT
GCGACAACTG TACGTCTGCG TGAAGTTGCG CTGGGTTATA CGATTCCTGT AAAAGGCACA
AGTTTCATCA GAGCGATGAA ATTGTCTCTG ACAGGTCGTA ACCTGCTGTA CTTCTCCAAG
AAAGCACCAT TCGATCCTGA GCTGACAATG TCAACGGCTA ACGGCCTGTC CGGTGTGGAT
ATCTTCATGC CGCCAGCAAC CCGTAACTAC GGTCTGACCC TGAACGCTAC CTTCTAA
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| Protein sequence | MKLTAILTLV FSLNLSARSY SQSVTITGKH LALYDIFNSI SKQTGYEFVY DEKMLNGTGT
IDINLKGASI AAVLDNCLKN KPLSYTITDK IIVIRPRAAR KEAAVTAEQP AAQVEGTVVD
GAGQPLPNVA IQVKGTTRGV LTDAKGHFSI QVESTDVLVF NYVGYDKKEV PVGTQTSLQI
VLQESNKQLN TVVVTALGLK RSEKSITYAT QQVSGVELTK AKDPNLMNTL NGKVAGLNIS
SSSSGVGGSA KVILRGAKSG LGSNQALYVI DGVPMNNSLT SQPNSSYGGS SSYDGGDPIS
NLNPDDIESV SVLKGASAAA LYGSQGANGV VLVTTKSGKA GRTIVNFSSS LTLNTVAYKP
EFQNSYGQST ATSTQSWGSK LAGGAQDNLG SFFQTGNNLT NSISLSGGTD KMQTYFSYAN
TSAKGIEPKN KLSRNNISFK ETGHFLNDKL TAEADVNYIT QTIDNTPLSG FYFNPLTGLY
LFPRGKDLAP YKNGFEVFDP ARRLMTQNWA FNEDIQQNPW WIVNRNQNSL DRNRLLLNAS
LKYEVNKWLN IQGRGSIDRI NDVYDQKVYA GTVTTLSPAN GVYIYSNTTT SQQYGDVLAN
FNIPIGDKIR ITGVLGGSIR DVITKGDKYN SGQEGLNIPN IFVLQNFKAI NPLNTGTLQE
NHSQVQSVFG SANISYKDWA YLDLTARNDW ASNLAFTPSG SYFYPSVGLN VILSSVAKLP
EFISFAKVRG SFAQVGNSPL AYQSNPAVYT FSAGGGFSIN PSAPFTDLKP EKTNSLEFGT
EWRFFDNRLS ADVTYYKTNT KNQTLQIRAP QGSFYDNFFI NAGNIQNQGV EAVVRYDVLR
DGKLKWNTGL NFATNQNRIK ELAPNAPEFT LSGASGSNYV SKFKVGGSFG DIYGTVLQRD
AQGRVMIDAN GNPIKQGGDF VYLGNSNTRW QLGWNNNLEY KDFTLSFLID GKFGGKVMSI
TQSVMDQYGV SKATGDARDA GGVAVNGVDP NGNAVSMVDA QKWYSSVGGR EAASGEYIYS
ATTVRLREVA LGYTIPVKGT SFIRAMKLSL TGRNLLYFSK KAPFDPELTM STANGLSGVD
IFMPPATRNY GLTLNATF
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