Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6729 |
Symbol | |
ID | 8362920 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 8426033 |
End bp | 8429143 |
Gene Length | 3111 bp |
Protein Length | 1036 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644968861 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003126331 |
Protein GI | 256425678 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACATC TACATTTGCT GTTTGTTGCG ATGCTTCTTT CCACGGTAGC ATTGGCTCAG ACAAGGCAGT TGCAGGGAAC TGTCAAAGAT TCTAAATCCG GTGCTCCGCT GGGTTCTGTA AGTATTAAGG TGCAGGGGAA AAATATCTTT GCAATCACGG GTGCTGATGG CGCATTCACA TTGAAGAATG CACCCGAAGG AGAAATTACA CTTGAAACAT CACTGATAGG TTATACTTCA AAGGGAATTA AAGTTGCAGC TGGTCAGACT TCCGTTGACC TGAGCATGGA AGAATCTTCT TCTCAGTTAG GTGAAGTAAC TGTAACCGCT TTGGGTATTT CCAAAGAATC CAAAAAACTC GGTTACTCTG TCACCAAAGT GGATGGTGCT TCTCTCACAC AGGCGCGTGA AACCAACGTT GCTTACTCTC TCGGTGGCCG TGTGGCTGGT TTGAGTGTAA GTGGTACAAA CGGTGGTCCC GGTTCTTCTG CCCGGGTACT GTTAAGAGGT ATGGCAAGCT TTGGCGCCAG CAGCCCGCTC TATGTTATCA ACGGTGTGCC GATGGATAAT TCACAAAGAG GTGCAGCAGG TGAGTGGGGC GGTTCTGATA ATGGTGATGG TATCTCTAAC ATCAACCCTG ATGATATCGA AAGTATGACT GTACTGAAAG GTGCTTCTGC ATCTGCATTG TATGGTACCC GTGCTACAAA TGGTGTGATT CTCATTACTA CCAAGAGTGG TAAGAAAGGT ACGATGCAGG TGGAATATAA CATGAACTAC ACACTGGATA AAGCGATCGA CTTTACAGAG TTTCAATATG AATATGGTCA GGGGCAGCAC GGTGTAAAAC CTGCTAACGC AACTGACGCA TTGGCCAGTA CCCGTTTAAG CTGGGGTTCA AAACTGGACG GCACCATGAC GCCGCAGTTC AATGGTAACT CGTACGCTTA TTCCGCTGTA GATGATAATA TCAGCCGTTT CTACAGAACA GGTCCGACCT TTACCAATAC AATCGCCGTA TCCAGCGGTG GTGAAAAAGG TACCTTCCGC GTGTCTGCTT CCAGCATGGA CAATCACTCT GTGTTGAGGA GCAGTGGTCT GAAACGTAAA ACCTTCAACC TGAACCTGGA TCAGAACCTG ACCAGCAAAC TCAAAGTGAG TGCTATGGTA AACTATATCG ATGACCGCTC ACAGAACCGT CCTCAGTTGA GTGATGGTCC GCTGAATGCG AACAACGGTA TTTTCCTGGC TACAAACATT AATGAAGATC TGCTGAAGCC AGGTTTTAAT CCTGACAACA ACGGCCGTGA GATTGTATGG ACGGATGATA ACTATGTTAC AAACCCATGG TTTGTCGTAA ATCAGTATAT CAATAACATC GACAGAAGAC GTTGGATCTC TGCACTGACT GTCCGTTACG ATTTCTTTGA CTTCTTATAT GCTCAGGGTC GTGTGGGTTA TGATAATATC AACGACCGCA AATTTAAGGT AACTCCATGG GGAACGGCTT ATTCCACAAG TACACTGCCT AATGGTACAA CCGTAAGCGG TGATCTGGAT CTGCGTAATG AACAGTCAAC GGAGTTCAAC GCGGATGGTC TGATCGGTTT CAAAAAGAAC ATCGTGGAAG ACCTGCAGGT AGACCTGGCT GTCGGTGGTA ACCTTCGTAA GAGAACCTGG GAAATGGTAG GCGTAGCTGG TAACCAGTAT ATCATACCTT ATGTATATTC TTACAGTAAC GTTACCAATT TCAGCAGGAA CTACGACTAT GAATCCAGAG AATCACAGTC TGCCTATTAC ACTGCGGACT TCTCCTATAA AGGATTCCTG ACTATCGGAA CAACTGGTCG TTATGATGTG TATTCTACTC TGCCTTCTGA TAACAGAAGC ATTTTTGTAC CCTCTGTATC AGGTAGCTTT ATTTTCTCTG AGCTGCTGAA CATTCCTAAG ATGACTTATG GTAAGTTACG TGCCTCTTAT GCGAATGCGA GTGGTGAGCC GGTGGATGCC TACATCACCA AATCTTACTA CAATGTGGGA AGTACCATTG GTGGCGTCAG CACTGGTGAT TTTTCTTCTA CACTGCCTAA CCTGTTCCTG AAACCATTTA CATTGAAAGA AGCGGAAGTT GGTCTGGAAC TGAAATTCTT CAATAACAGA CTGGGGGTTG ATCTCGCTTA CTTCCACCGT AAGACGAAGA ACGAAATCAT CCAGGGTACC ATCTCTCCGG CAACTGGTTA TGAAAAAGCT TATTTCCCGA CCGGTTCTAC CCAGAACACT GGTTTTGAAG CACAGATCAA TGGTACAATC GTATCCAGCT CCAGTTTCAC CTGGAATGCT TCTGTGAACG GTACTTATAT CAAGAACAAG ATCCTGGATA TTTATGGCGA CAACAGCAGC AGTACGATCC TGACACTGGG TACCTACCGT CCGCTGAACG CAAATACGGC CCTCGTAAAA GGTTTAGCTG GTCCGCAGAT CCTGGCGTAT GATTTCAAAC GCAATGACAA AGGTGAAGTA CTGCTGGATA ATTCCGGTCT GCCGATCAAT GATGGTGTGC TGCGTCCAAT GGGTAGCGTA CTGCCTAAGT TCTTCGGTGG TATCAATAAC GATTTCTCCT TTAAAGGCTT CAACCTGTCA TTCCTGATCG ATGGTAAGTT TGGTGCGAAG ATCCTGTCTG CCACAAAAGA CTATGCGGTA TTCCGTGGTC TGGATAAATC AACCCTGGCA GGCAGAGAAT CAGGTATCGT AGTGGATGGT ATCATTGAAA GCACAGGACA GAAAAATACA ACGAACGTAG ATGCGCAGTC CTATTACCAG GCATATGCGA ATAAGATCTC CAAAAACAGC GTACTGGATG CGGACTTCAT AAAACTGCGC CAGTTAACAT TTGGTTATAC CCTGGGTAGC AAGGTAATGG GTAAAACACC ATTCGAATCT ATCGGTATAT CACTGGTAGC ACGTAATCTG CTTACCCTCA TGCGCAAGTC TGACAACATA GACCCAGAAT CCGGATTTTC TTCACTCATC AACTACGCAG GTATCGAAGG TACCAGTTTA CCAAGTACCC GTACCTATGG TGTGAATGTG AACGTAAAAT TTAAAAAATA A
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Protein sequence | MRHLHLLFVA MLLSTVALAQ TRQLQGTVKD SKSGAPLGSV SIKVQGKNIF AITGADGAFT LKNAPEGEIT LETSLIGYTS KGIKVAAGQT SVDLSMEESS SQLGEVTVTA LGISKESKKL GYSVTKVDGA SLTQARETNV AYSLGGRVAG LSVSGTNGGP GSSARVLLRG MASFGASSPL YVINGVPMDN SQRGAAGEWG GSDNGDGISN INPDDIESMT VLKGASASAL YGTRATNGVI LITTKSGKKG TMQVEYNMNY TLDKAIDFTE FQYEYGQGQH GVKPANATDA LASTRLSWGS KLDGTMTPQF NGNSYAYSAV DDNISRFYRT GPTFTNTIAV SSGGEKGTFR VSASSMDNHS VLRSSGLKRK TFNLNLDQNL TSKLKVSAMV NYIDDRSQNR PQLSDGPLNA NNGIFLATNI NEDLLKPGFN PDNNGREIVW TDDNYVTNPW FVVNQYINNI DRRRWISALT VRYDFFDFLY AQGRVGYDNI NDRKFKVTPW GTAYSTSTLP NGTTVSGDLD LRNEQSTEFN ADGLIGFKKN IVEDLQVDLA VGGNLRKRTW EMVGVAGNQY IIPYVYSYSN VTNFSRNYDY ESRESQSAYY TADFSYKGFL TIGTTGRYDV YSTLPSDNRS IFVPSVSGSF IFSELLNIPK MTYGKLRASY ANASGEPVDA YITKSYYNVG STIGGVSTGD FSSTLPNLFL KPFTLKEAEV GLELKFFNNR LGVDLAYFHR KTKNEIIQGT ISPATGYEKA YFPTGSTQNT GFEAQINGTI VSSSSFTWNA SVNGTYIKNK ILDIYGDNSS STILTLGTYR PLNANTALVK GLAGPQILAY DFKRNDKGEV LLDNSGLPIN DGVLRPMGSV LPKFFGGINN DFSFKGFNLS FLIDGKFGAK ILSATKDYAV FRGLDKSTLA GRESGIVVDG IIESTGQKNT TNVDAQSYYQ AYANKISKNS VLDADFIKLR QLTFGYTLGS KVMGKTPFES IGISLVARNL LTLMRKSDNI DPESGFSSLI NYAGIEGTSL PSTRTYGVNV NVKFKK
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