| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6660 |
|---|
| Symbol | |
|---|
| ID | 8362849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8353629 |
|---|
| End bp | 8356856 |
|---|
| Gene Length | 3228 bp |
|---|
| Protein Length | 1075 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644968793 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003126265 |
|---|
| Protein GI | 256425612 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.150052 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.983819 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAAA CATTTTACCA GCATTTTCCA TTTTTACGCC TGCTGCTATG GCTGCTGCCC
TTTATGGCGC CCGCTCTGTC GTATGCACAG GCGAAGCCAG ATATAACGGG TATCGTACTC
GATCCGCAGG GAGAAAAGAT ACCAGGTGTT ACCGTCAGAG CCTTACAGAC CAATGGCAGT
AAGCCCGTCT TTCAGATGAC CGATGAAAAG GGATGGTTTC ATTTTGATAA CCTGAATGCA
GGGGAACGCT ATAACTTCAG TTTCAGCTCC GTCGGCTATA AACCGCAACA GCTGGATGGC
TATATCATCA AAAAAGGGGA AACCATCAAC CTGATTGTAA GAATGCGTCA GAAAGACGAC
TCGCTTGCAC AGGTAGTCGT AGTCGGTTAT GGTACACAAA AAAAGTCGGA AGTCACCGGT
GCGATCGCCC AGGTAGGACA GGAAGTATTT GAAAACAGAC CAGTAACCAG TATCGGTCAG
GCGCTCCAGG GCGCTATTCC CAACCTGAAC ATTACCTTCG GTGATGGTCA GCCAGGTAGA
GCAGCTACCT TTAACGTACG TGGTTTTACT TCTATCAATA CGGGTAGTCC GCTGATCCTC
ATAGACGGTA CGCCTGGTGA TATCAATCTT GTCAATCCTG AAGATGTAGC CAGCGTGACC
GTCCTTAAAG ACGCAGCTTC TGCTGCTATC TATGGTGCGC GTGCTGCTTA TGGTGTGATC
CTCGTCACTA CGCGTAAAGC CAAAAGCGGC CAGTTACAGG TACGTTACTC CGGTAACTTT
GGATGGGGTA CACCCACCCG CTTGCCACAG GTGATCAAAG ATCCGCTGGA AGCTGCCACT
ATTCAGAATG ATGCATATAA AGGCTATGCT GGTTCTGATG CACCGGGTAT GCTGGCGGTG
ATCGAATATC TGCAGAAAAG AAAAGCAGAT CCTTCTCTGC CTGAACTGGG TGTAGATGCT
ACCGGCAATT TTATCCGTGG CGCTAACACA GACTGGTACG ACCTGTTTTA CAACAAACAA
CAGGCTTTCT CCAAACACTT TGTCAGTGTC GCTGGTGGTA AAGGCAATAC CAACTATTAC
CTCTCGGCCG GATACCTCAA ACAACAAGGT TCCTTTAAGG TGGCGACGGA CGACTATAAA
CGTTACAACC TCCGCCTGAA ACTGGATAAC CAGGTGGCCG ACTGGCTCAA AATATATGAT
AACGTGGAAA TGGCACAGGG CGCCTATGAT GCGCCTGATA AGTTTGTATC TGGTGGTTAC
AATATTTACC GCTACCTCTC CCTGTTTGCC AACCCCTACG AAGCGATCCG TACACCGAAT
GGCTATTATA CACAGGCCGG CGCCGTTACG TTCGGACAGT TGGAAAAAGG TGGTCGTACG
AACATAAAGG ACCGGCAACT AAAAAACACC ATCGGTTTTT CCACCAACTT TCTTGATAAC
ACATTGCGTA TAAATGGTGA TTATACCGTG CTGGCTACCC AGGACCGTAA CGACATACAG
ACCAACAGTG TGTATTATGA AGTAAGACCG GGTACCGTGT CTCCATTCAC CGCTACGGAT
TATTATCAGT CTGCTTATAC CGAAAACTTT GACCAGGTAG TGAACCTCTA TGCCGAATAC
GAACGCAGAC TAGGCCAGCA TCACCTGAAA GGACTACTGG GTTTTAACCA GGAAATGAAT
AAATATGAAA CCTTCTCTGC CAGAAGAGAT GGTAATATCA CACCGGATAA AGGTGCGCTG
AACCTGGCCA GCGGTATTGC CACAGTAGGG GATACCAAAG AAGAATGGGC CATCCGTGGT
TTGTTCTACC GATTGAACTA TGACTTTAAA GACCGGTATT TACTGGAGTT CAACGGTCGC
TATGATGGTT CCTCCCGTTT CCCGGATTCC AGTCGTTATG GCTTTTTTCC TTCCGTATCT
GCAGGCTGGA TCGTGTCGCG TGAGCCTTTC TTTGCACCCG CAAAGAAGGT ATTCAATAAC
CTGAAACTCC GTGCGTCTTA TGGTTCCCTG GGAAACCAGC AGGTAGCTGC TTATGCTTTT
ACCAATCCAA TGAGTGTGTA TAAGATCACC GATATCCTCG ACGGTGCACA ACCTTTAGGG
ATCAATGCGC CTGGTTTACT GCCCTTACAT TTTACCTGGG AAACAGCGAC CACACTCGAC
TTCGGGATTG ACTTCTCCAC ACTGAACAGC CGGATGGATA TCGGGTTCGA CTGGTATAAC
CGGAAAACAA CAAAGATGCT GACCCAGGGC AAGACCTTAC CCGCAGTACT CGGGGCTTCC
GCACCAAAGG AAAATGCAGC AGATCTGTCT ACCAAAGGAT GGGAGTTCTC TGCGAAATGG
CATGATCAGT TTCAGTTAGG TAACAAACCT TTTTCCTATA ACTTCTCTTT TGTTTTGTCT
GACAGCAGGT CTTTCATCAC CAAATTTGAC AACCCCAACA AGTCACTGAT CAATCATTAT
ATCGGCGAAG AGATTGGCGA GATCTGGGGA TATAAAACGC TCGGCTTTTT TCAGTCCGAT
GATGAATACC TGAAATATGA TGTGAACCAG CAACGTGTAC AAAGTACTTC TTACAGCCTG
AATGGTCACC CGCTGGCTGG TGATCTGAAG TTTGCTGATC TCAATGGAGA TAAGAAAATC
GACAATGGCA AAAACACCGT GAACGATCCG GGCGATATGT ACAAGATCGG TAATAGTATG
CCGCGTTATG CCTTTGGCTT TGGTGCAGGA GCCAGCTGGA ATGGTGTATC GCTGGATGTA
TTCTTACAAG GTATCGGCAA GATGGACTTC TGGCCGGGTG TGGAAGCAGG TAATTTCTGG
GGCTTTTATA ACCGCTGGAA TCAACCGGTA TATGATCACA TCAACAATGA TTACTGGACA
CCTGAAAACA GGAATGCTTA TTTTCCAAGA CTCAGAGCCT ATGATGCTTT GAATAACACC
CGTCAGTTAG GTGTGGCACA GACACGTTAT TTGCAGAATG CCGCTTATCT GAGAGTCAAG
AACGTATCGC TGGGATACAT TTTACCGGTT AACTGGACAA GAAAAGCCGG TATCAGCACT
GCAAAAGTCT TCTTCTCCGG CCAGAACCTG TTTGAATTCA CACACCTCTC TAAAGTCTTC
GATCCGGAAG CCATCAGCGA TAAGGTAGAT ACGAATACTG CTAATGGTAA CGGGTTCCTG
TACCCGGTAC AACGTACGTA CACCTTCGGA CTTGAAGTTA ATTTCTAA
|
|---|
| Protein sequence | MTKTFYQHFP FLRLLLWLLP FMAPALSYAQ AKPDITGIVL DPQGEKIPGV TVRALQTNGS
KPVFQMTDEK GWFHFDNLNA GERYNFSFSS VGYKPQQLDG YIIKKGETIN LIVRMRQKDD
SLAQVVVVGY GTQKKSEVTG AIAQVGQEVF ENRPVTSIGQ ALQGAIPNLN ITFGDGQPGR
AATFNVRGFT SINTGSPLIL IDGTPGDINL VNPEDVASVT VLKDAASAAI YGARAAYGVI
LVTTRKAKSG QLQVRYSGNF GWGTPTRLPQ VIKDPLEAAT IQNDAYKGYA GSDAPGMLAV
IEYLQKRKAD PSLPELGVDA TGNFIRGANT DWYDLFYNKQ QAFSKHFVSV AGGKGNTNYY
LSAGYLKQQG SFKVATDDYK RYNLRLKLDN QVADWLKIYD NVEMAQGAYD APDKFVSGGY
NIYRYLSLFA NPYEAIRTPN GYYTQAGAVT FGQLEKGGRT NIKDRQLKNT IGFSTNFLDN
TLRINGDYTV LATQDRNDIQ TNSVYYEVRP GTVSPFTATD YYQSAYTENF DQVVNLYAEY
ERRLGQHHLK GLLGFNQEMN KYETFSARRD GNITPDKGAL NLASGIATVG DTKEEWAIRG
LFYRLNYDFK DRYLLEFNGR YDGSSRFPDS SRYGFFPSVS AGWIVSREPF FAPAKKVFNN
LKLRASYGSL GNQQVAAYAF TNPMSVYKIT DILDGAQPLG INAPGLLPLH FTWETATTLD
FGIDFSTLNS RMDIGFDWYN RKTTKMLTQG KTLPAVLGAS APKENAADLS TKGWEFSAKW
HDQFQLGNKP FSYNFSFVLS DSRSFITKFD NPNKSLINHY IGEEIGEIWG YKTLGFFQSD
DEYLKYDVNQ QRVQSTSYSL NGHPLAGDLK FADLNGDKKI DNGKNTVNDP GDMYKIGNSM
PRYAFGFGAG ASWNGVSLDV FLQGIGKMDF WPGVEAGNFW GFYNRWNQPV YDHINNDYWT
PENRNAYFPR LRAYDALNNT RQLGVAQTRY LQNAAYLRVK NVSLGYILPV NWTRKAGIST
AKVFFSGQNL FEFTHLSKVF DPEAISDKVD TNTANGNGFL YPVQRTYTFG LEVNF
|
|---|
| |