| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6613 |
|---|
| Symbol | |
|---|
| ID | 8362801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 8293572 |
|---|
| End bp | 8294087 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644968745 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_003126218 |
|---|
| Protein GI | 256425565 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1607] Acyl-CoA hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.184351 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0168769 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTAA CGCCCAAGCG TGCGCAGGAC TCGGTGATCC AGATGACGGA ACTGGTACTG
CCAAATGACA CCAACACTTT CGGTAACCTG ATGGGTGGCC GCCTTATGTA CTGGATGGAC
ATAGCGGGTG CCCTTGCCAC CATGAAACAC TGTAGTGCTC CCGTGGTAAC TGCCTCTGTA
GATAACATTT CTTTTGAAAC CCCCATTAAG CTGGGCAACG TAGTACATAT TGAAGCCAAG
GTCAGCAGGG CCTTTTCCAC CTCCATGGAA GTGCATCTGC GTGTGTGGGG AGAAGATCCG
GTACAGCAAT ACCGTTATAA ATCCAACGAA GCCTTTATGA CCTTCGTCGC CCTGGACCCT
AATGGTAAAT CCAGACTGGT GCCGCAGATC ATTCCTGATA CCGAAGAAGA AAAACAGCTG
TATGAAGGCG CTATGCGCAG ACGTCAGCTG AGGTTGATCC TGAGTGGTAA GATGAAACCA
CAGGATGCGG AAGAACTGAG AGCGCTGTTT CTTTAA
|
|---|
| Protein sequence | MTLTPKRAQD SVIQMTELVL PNDTNTFGNL MGGRLMYWMD IAGALATMKH CSAPVVTASV
DNISFETPIK LGNVVHIEAK VSRAFSTSME VHLRVWGEDP VQQYRYKSNE AFMTFVALDP
NGKSRLVPQI IPDTEEEKQL YEGAMRRRQL RLILSGKMKP QDAEELRALF L
|
|---|
| |