| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6418 |
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| Symbol | |
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| ID | 8362602 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 8061547 |
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| End bp | 8065653 |
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| Gene Length | 4107 bp |
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| Protein Length | 1368 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644968546 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_003126023 |
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| Protein GI | 256425370 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0100911 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGTCA GCAATAAACA TTTCATCCCC GTCATCGGGC TTGATATCCA CATTGTTATC
CTGCTTGGAT TTCCCATTCC ACTGCCCCAC CCCTACATCG GGTTCGTCAT CGACCCCATG
GATTACATTC CTTTTCTGGG TGCTACCACC AAAGTAAATC ATGTACCCCG CGGTGTCAGC
GATACCAGTG GCATCATTGT TATCCTCTTT CATATTCCCA TGGGTGGTCC CTGGCTGCTG
GCGCCAATGA TCGGACATGA TTCCGTTAAC TTCTTTGGCA GCAAGACAGT AAAAGCAGAA
GGCAGGCTAT TAAGTCCGAC AGGACATATG CTGATGACCT GTAACGATAT CGGTATTCCA
CTGTCCTTAC AGCCGGGAAA GAAACTGAAG CCCATCCCCA GCATGTATCT GCCTACCTCA
TTTTCTATTC CGCTTTCCTT CGGAAAACCA GTGATGGTGG GCGGACCATA CATCCCCGAC
TGGGCAGGCG TACTCATGAA CCTGATCACT TCCTTCGGAT TTGGCGCACT GATGAAAGGC
GTAGGGAAAT TGGGCAAGAA AGCCGTTACT AAATTTAATC ACGCATTAAA AGGAAAAATA
GGCAGTAATA AACTCAGTAA AAACCTGTGT AAAATGGGTT TTGAACCGGT GGACCTGGTA
CAGGGTATTG TGGTCAATGA AGGCGTAGAC TTTGAACTAC CCGGCCCTAT TCCCTTGAAA
TGGGAAAGAT CCTGGAATAG TGATAGTCCG CATAAAGGCT TACTCGGACA CGCCACACAT
CTGAGTTATG ACATGCGCGT CGAAGAGTTT ATACAGGAAG ATGCCACCGT CGTATTACTT
GGTGATGGCA GAAGTGCTGT CTTCGATCTG CTGATTGCTG TCGATAATAG TGATTATAAC
CGCCACGAGC GACTGACACT CAAACGGACA GACATTGATG AATACCAGTT ATACAATCAT
GAAAACGGGT TGTATTATAC CTTCCGGAAG ACCTATGAAG GTGCACATCA ATATCATCTG
TCTGCCATCC ATAATAAAGC ACAGTTTATC ATCAGCTTCC ATTATAACCA CCGGGGTAGT
CTGGTACGGG TGATAGACAG CGTTGGCAGA CACCTGCATG TCAGCAGTGA TGCAGCAGGA
CGTATCACGG GTGTAAGCGT TCATCATCAT GGACAGGAAA AACGCCTGAT CTCCTATGGA
TATAATGATG AAGGTGACCT GATTGCCGTA ACAGATGCAT TAGAACAAAC CATGCATATC
ACTTACGCCA ATCACCTGAT GATTAAAAAG ACAGATCGTA ACGGACAATC TTTTTACTGG
GCGTATGATA AAAAACACCG CTGTATTCAT ACCTGGGGAG ATGATGGTTT GCTGGAAGGT
TATATCGAAT ATTACCCTGA AGACGGGTTT AATATTGTAA CGAACTCACT CGATCAGCAA
ACGACCTATT ACTACACGCC TGATTATGTC GTACACCAGA TCAAAGACCC GCTGGGCCAT
TCCACGTTCA CGGAGTATAC ACCTGACTTC GAAATATACA GAGAGATCAA TGAAGAGGGC
GATATGACAG GGTATAGTTA TGATGAAGAG GGACGCGTGA CAGCGGTCGT TTACCCTGAT
GCCAGTATTT CCACACATAG CTATGATGAA AATGGCTATA TGGCAGTATC AACGGATGCC
CAGGGCAATA GTACTTCTTA TGTGTATTAT CAGGATAATG GATTACTGCA TTCGCTTACT
TCCGCAGATG GTTCACTGGA ATTATTTGAA TACAATGAAA GAAACCTGCT CAGTAAAGTA
ACCGACTTCA GAGGCGGCAC TACCTTGTTT GCCTATGATG AAGATTGTAA CCTCACCACA
CTTACCTTAC CGGAGGGAGG TACTACCAGC TGGGCTTATG ATGCATGGGG ACAGTGTATT
AAAGCAGTGA ACCCTTTAGA ACAGGAACAA CTGTTCCGTT ACGACAAGCT GGGGCGCGTG
ATTGAAATAC TGGCGGCTGA CGGCAATCGT ACCGAATTAC AATATGATGC CTACGATGAC
GTCACCAGGA TGACAGACAA ACAACGGGAT ATCAGGTATA CTTATACTCC CCTGGGTAGT
CTGAAATCAA GAGAGGAAAA CAATACCGCC GTTCGTTTCA TCCATGACAC GGAAGACCTG
CTCTGTTCCA TTATAAATGA GCACGGAGAG ACATTCCGGT TCAGACGTGA CATGCGCGGA
GATATTATCG GAGAAACACG TTTTGACGGA TTAAACAAAC ACTATAAGCG GGATGCAGCA
GGAAAGCTGA TACATTCGCA TTATGACAGC GGAAAATATA CCGATTATGA GTACAATGCG
ATCGGTTTGC TGACACGCAT TGAACAAAGT GACGGTAGCT GGGAAATCTA TAGCTATGAC
CGCAATGGTC ATGTTACAGA AGCCACCAAT GAAAACAGCA GCGTAAAATT TGTAAGAGAT
GCCCTGGGCA GGATTGTAGA AGAATGGCAG GACGGCCACC AGGTCATGAG TGTATATGAC
AAACAGGGCC GGCGTACCGC CATCAGCAGT GCCATTGGCG CGGATATTAA GGTACAAAGA
GATCAGACGG GCTACCTGAC CGGTATGCAC GTGCAGACAG CTGGTAATAT CAATCCCTGG
GTCATGCACA TTGAGCGTAA CCTGATGGGC CTTGAGATTG AAAGAAACCT GCCAGGTGGC
GTAAAAAGCA AACGTTCCTA TCATCAGTCC GGACTGATCG CTACACACAC CGTGAGCAGC
GGCGCGAATA TTACCCGTAG CCGGCATTAT CGCTGGGATG TGAACGACAG ACTTAAAAGT
ATTGTCAACG CCCTGGAAAG TGGCAATGGG ATCAAATACG GGCATGATGA TTTCGGCAAC
CTGGCCTGGG CGCAATATGA AGACGGACAG TTTGATTATC GCCTGCCTGA TAAGACGGGC
AATCTGTATA AAACCACAGA AAGAAAAGAC CGGAAATACA CCAGTGGTGG TCAGTTGAAG
GAAACAGCCG ATGCCAGGTA TTCCTATGAT GCGGAAGGAA ACCTCACAGA AAAACTGATG
CGTGACCTTT CCTTATGGAA ATATGAGTGG TATGGTAATG GCATGTTGAA AAAAGTGATA
CGTCCGGACC GCCGCGAAGT ACAGTTTGAA TATGATGCTC TGGGAAGAAG GACGGCCAAG
ATATTCGGAC AACAGATAAC ACGCTGGGTA TGGAATGGCG GTAAACCTTT GCACGAATGG
CATTATAATG TAGCGGAGCG CCCGGTGACG GTGATCGATG ACACAGGCAA TGTATACAGA
GATCCTGAAC CGGTACCTGT GGAAAACCTG ACTACCTGGG TATTCGATCC TGAATCACAT
CTGTTGCTGG CAAAGATCTG TGGAGGCGTA AGTTATTCGA TCATTACAGA TCATATTGGG
ACTCCCTGTC AGGCATATGA CGAAGAAGGA AACATTGTCT GGTCCTGTGA ATTGGATATT
TATGGAAAGG TACGTAAGTT AGCAGGGCCT ATCGATTTCA TACCGTTCCG TTATCAGGGA
CAGTATGAAG ATGTAGAAAC CGGACTCTAT TACAACAGAT ACCGGTATTA CAGCCCCGAC
GAAGGCATAT ATATCAGTCA GGACCCCTTA GCGCCGCTGG CTGGTTTACG GTTCTATAGT
TATGTAACAG ACCCGAATGC ATGGGTTGAT CTGTTGGGAT TAGTGGCCGG CCCTGCCGGA
TTGCCCGATT CACCCGGTAT TTATATTCTC ACCAATGGTA AACAATCTTA TGTAGGTAGT
TCAGGTATTG GCGAGCAGGG TATGCGGTCG CGTATATCAG ATCTGCGGCA TGCGAATGCC
CAGGATTTAC TGGAGATGGA CGGTACAAAA GTGCAGTATG TGAAAGTTGA TCTTGGGGAT
TGTACAGACC CCAGCGAACG AAACAACATA CTGAGGTATT ATGAACAAAG GGAGTTTGAT
AAACAGGCGA AGAAAACCGG TATGACGATG CTGAATGATC CTAACAAACG GATACAGTCA
GCCAAGAAAA AAGCGGCCGC AGAAGCACTT ATTAAAAAAT ATAATGTAAA AGCATCTAAA
CGAAGAGTTA CCGTTAAGTG TAAATAA
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| Protein sequence | MLVSNKHFIP VIGLDIHIVI LLGFPIPLPH PYIGFVIDPM DYIPFLGATT KVNHVPRGVS
DTSGIIVILF HIPMGGPWLL APMIGHDSVN FFGSKTVKAE GRLLSPTGHM LMTCNDIGIP
LSLQPGKKLK PIPSMYLPTS FSIPLSFGKP VMVGGPYIPD WAGVLMNLIT SFGFGALMKG
VGKLGKKAVT KFNHALKGKI GSNKLSKNLC KMGFEPVDLV QGIVVNEGVD FELPGPIPLK
WERSWNSDSP HKGLLGHATH LSYDMRVEEF IQEDATVVLL GDGRSAVFDL LIAVDNSDYN
RHERLTLKRT DIDEYQLYNH ENGLYYTFRK TYEGAHQYHL SAIHNKAQFI ISFHYNHRGS
LVRVIDSVGR HLHVSSDAAG RITGVSVHHH GQEKRLISYG YNDEGDLIAV TDALEQTMHI
TYANHLMIKK TDRNGQSFYW AYDKKHRCIH TWGDDGLLEG YIEYYPEDGF NIVTNSLDQQ
TTYYYTPDYV VHQIKDPLGH STFTEYTPDF EIYREINEEG DMTGYSYDEE GRVTAVVYPD
ASISTHSYDE NGYMAVSTDA QGNSTSYVYY QDNGLLHSLT SADGSLELFE YNERNLLSKV
TDFRGGTTLF AYDEDCNLTT LTLPEGGTTS WAYDAWGQCI KAVNPLEQEQ LFRYDKLGRV
IEILAADGNR TELQYDAYDD VTRMTDKQRD IRYTYTPLGS LKSREENNTA VRFIHDTEDL
LCSIINEHGE TFRFRRDMRG DIIGETRFDG LNKHYKRDAA GKLIHSHYDS GKYTDYEYNA
IGLLTRIEQS DGSWEIYSYD RNGHVTEATN ENSSVKFVRD ALGRIVEEWQ DGHQVMSVYD
KQGRRTAISS AIGADIKVQR DQTGYLTGMH VQTAGNINPW VMHIERNLMG LEIERNLPGG
VKSKRSYHQS GLIATHTVSS GANITRSRHY RWDVNDRLKS IVNALESGNG IKYGHDDFGN
LAWAQYEDGQ FDYRLPDKTG NLYKTTERKD RKYTSGGQLK ETADARYSYD AEGNLTEKLM
RDLSLWKYEW YGNGMLKKVI RPDRREVQFE YDALGRRTAK IFGQQITRWV WNGGKPLHEW
HYNVAERPVT VIDDTGNVYR DPEPVPVENL TTWVFDPESH LLLAKICGGV SYSIITDHIG
TPCQAYDEEG NIVWSCELDI YGKVRKLAGP IDFIPFRYQG QYEDVETGLY YNRYRYYSPD
EGIYISQDPL APLAGLRFYS YVTDPNAWVD LLGLVAGPAG LPDSPGIYIL TNGKQSYVGS
SGIGEQGMRS RISDLRHANA QDLLEMDGTK VQYVKVDLGD CTDPSERNNI LRYYEQREFD
KQAKKTGMTM LNDPNKRIQS AKKKAAAEAL IKKYNVKASK RRVTVKCK
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