Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6404 |
Symbol | |
ID | 8362588 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 8046645 |
End bp | 8048585 |
Gene Length | 1941 bp |
Protein Length | 646 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644968532 |
Product | DNA ligase D |
Protein accession | YP_003126009 |
Protein GI | 256425356 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02778] DNA polymerase LigD, polymerase domain [TIGR02779] DNA polymerase LigD, ligase domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0822092 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGGCCA CATTGGTTGA TCATCCTGTG GATACACCCG GCTGGCTGTA TGAAGTAAAA TGGGATGGCT ATCGCGCAAT TGCCCTGCTG AACAAAGGCG GCATTCAACT GATCTCCCGT AACAACAAAT CATTCGACGA GAAATTCTAC CCCGTCTTCC ATGCACTGGA AGCCTGGAAG ATTAACGCCA TCCTTGACGG TGAAATAGTC GTGCTGACCC CAGATGGTAT CTCCCGCTTC GCTGATCTTC AGAACTGGCG GAGTGAGGCC GACGGTGAAC TGATCTACTA TGTATTCGAT CTTTTGTGGC TGAATGGGTA CGATCTTACA CAACTTCCCC TCATTCAGCG ACGGGAGCTA CTGGAAAGCC TGTTTCCTGC GCCTGATATC ATCCGGCTCA GCACCGCCTT CAGAGATACC TCCTCAGCAG AATTTCTTTC CGCGGCCAAG TCACTCGGAC TGGAAGGCAT CATTGCCAAA AAAGAAGACA GTATTTATCA TACAGGTCTC CGTAGCCGGG ATTGGTTAAA GATTAAAATC AATAAACGAC ATGAAGTCGT CATTGGCGGT TATACGCGTA ATGAAAACTC TTCCAAACCA TTTAGCTCTT TGCTCGTAGG TGTATTTGAA AAGGGCAAGT TTCAGTATAC GGGAAAGATA GGCACCGGCT TTACCAGCGC CCAACAAAAG GAAATGCTGC AGGCATTCAA ACCCCTGATC AGAAAAACAT CTCCTTTCAG TACTGTACCT GATATCAACA AACCTTCCCG CTTCCGTCCG AACCCGCCAA AGGCAACAGC CGTCTGGCTA AGTCCTCAAC TGGTATGTGA AGTGAGTTAT GCCGAAATCA CGGCTGATGG TGTCATGCGT CACCCCTCTT TCGAAGGTAT GCGTATAGAC AAGACGGCAA AAGAAGTGGG AAAAGAAGAA GCCATGCCTG TCGCCAAGGT TGTAAAAGAA GCGGCTGGCG CTATCTCGCA ACAAATGCTG ACACCTGTTG TTGGTGGTGA CCGCAAAACA CTATTGAACC CCTCTGAAGC CACTCAGGTA CGAAAAGTCA GCAAACATGA ACTGAAATTC TCCAATCTTA ATAAAGTCTT CTGGCCGGAA GAAAAGTATA CCAAACGGGA TATGCTGAAT TACTACTATC AGGTAGCGCC TTACATATTG CCTTACCTGA AAGACCGGCC ACAATCGCTT AACAGATTTC CAAACGGTAT TAAAGGCAAA AGCTTCTATC AGAAAGATGT AACGGGTAAA GCGCCTGACT GGATCAAAAC CTTCCCCTAT CATACCAATG ATGGAGAAGA CAAAAACTTT ATGGTACCCA CTGATGAAGC CAGTCTGCTC TACATGGCCA ATCTGGGTGC TATCGAAATG AATCCCTGGA ACAGTAAGAT CAGTAAACCT GATTATCCTG ATTGGTGTAT TATTGATCTG GATCCAACAG AAAAGAATAC CTTTGAGCAG GTAATCAGAA CCGCACAGGT TACAAAAGAG ATATTAGACA GCATTAAAGT TCCAGGCTAT TGCAAAACAT CCGGCTCTAC CGGCATACAT ATCTACATTC CTTTAAACGC AAAATATACA TACGAAGATT GTCAGTTGTT CGGCAAATGG ATTGCCTCCC AGGTACATCA GCAACTTCCT TCTTTTACAA GTATTGAACG CATGACGCAG AACAGAAAGG GCAAAATATA TGTTGATTAT CTACAGAACA GGCCAAAGGC TACGCTTGCA GCCCCTTACT CCCTGCGCCC AAAACCAGGT GCAACGGTCT CCATGCCGCT ACATTGGGAC GAAGTAAAGA AGGGACTTAA AATGAAAGAC TTCAATATTA CCAACGCCAT CGCCCGTATC AGCGAAATGG GGGACATCTT TAAACCGGTA CTTGGCAAAG GGATTGATAT GAAAAAAATA CTACGGTCTA TACGGCCGTA A
|
Protein sequence | MLATLVDHPV DTPGWLYEVK WDGYRAIALL NKGGIQLISR NNKSFDEKFY PVFHALEAWK INAILDGEIV VLTPDGISRF ADLQNWRSEA DGELIYYVFD LLWLNGYDLT QLPLIQRREL LESLFPAPDI IRLSTAFRDT SSAEFLSAAK SLGLEGIIAK KEDSIYHTGL RSRDWLKIKI NKRHEVVIGG YTRNENSSKP FSSLLVGVFE KGKFQYTGKI GTGFTSAQQK EMLQAFKPLI RKTSPFSTVP DINKPSRFRP NPPKATAVWL SPQLVCEVSY AEITADGVMR HPSFEGMRID KTAKEVGKEE AMPVAKVVKE AAGAISQQML TPVVGGDRKT LLNPSEATQV RKVSKHELKF SNLNKVFWPE EKYTKRDMLN YYYQVAPYIL PYLKDRPQSL NRFPNGIKGK SFYQKDVTGK APDWIKTFPY HTNDGEDKNF MVPTDEASLL YMANLGAIEM NPWNSKISKP DYPDWCIIDL DPTEKNTFEQ VIRTAQVTKE ILDSIKVPGY CKTSGSTGIH IYIPLNAKYT YEDCQLFGKW IASQVHQQLP SFTSIERMTQ NRKGKIYVDY LQNRPKATLA APYSLRPKPG ATVSMPLHWD EVKKGLKMKD FNITNAIARI SEMGDIFKPV LGKGIDMKKI LRSIRP
|
| |