| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6264 |
|---|
| Symbol | |
|---|
| ID | 8362446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7894431 |
|---|
| End bp | 7895108 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644968392 |
|---|
| Product | outer membrane lipoprotein carrier protein LolA |
|---|
| Protein accession | YP_003125871 |
|---|
| Protein GI | 256425218 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
|---|
| TIGRFAM ID | [TIGR00547] periplasmic chaperone LolA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.9393 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.236889 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGAA TTTTATTACT GGCCATGTTG ACGGGCGGAA TTGTAGTGAA TGGCATGGCT
CAGACCAAGA CGCCAGTGGG CAGTCTGGGT AAAAACGATC CAAAAGCAAA AGCAATACTC
GACGGGGTGA GCAAGAAGTT TGCCCAGTTA AAATCAGTAG TCGCTAATTT TGTTTTGAAA
GTAGAAGGCG CTAATAACAG TGTAACTGAC TCTAAGAAAG GTACCGTTTA CCTGAAAGGA
GCCAAATATA AAGTGAACCT GGATGGTCAG GAACTGATCA GTGATAACAA AACGACCTGG
ACATACACAA AAGATGCTAA CGAGGTAACA ATCAACAATG TAGACCCTAA CAGCACTTCC
CTGTCGCCAG CTAAACTGTT CACCAATTTC TACGATAAAG ATTATCTGTA CCGCCTGGAT
GGAGAAACTA CCGAAAAAGG AAAAGTACTC CAGAACATCG AAATGACACC TACAGATAAA
TCAAAGAACG TATTCAAAGT GATCGTTTCT ATCGATAAGA AAGGCCAGAA CATCGCTAAG
ATGAAGGTTT ACGAGAAAAA CGGCAATCAT TATACATACG AGATCACCAA CTTCACACCA
AACGGAAGTG TGACCGACGC TACCTTTAGC TTCGATCCTA AGAAATACCC TGGTGTAGAG
GTGGTTGACC TCCGCTAA
|
|---|
| Protein sequence | MKRILLLAML TGGIVVNGMA QTKTPVGSLG KNDPKAKAIL DGVSKKFAQL KSVVANFVLK
VEGANNSVTD SKKGTVYLKG AKYKVNLDGQ ELISDNKTTW TYTKDANEVT INNVDPNSTS
LSPAKLFTNF YDKDYLYRLD GETTEKGKVL QNIEMTPTDK SKNVFKVIVS IDKKGQNIAK
MKVYEKNGNH YTYEITNFTP NGSVTDATFS FDPKKYPGVE VVDLR
|
|---|
| |