| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6254 |
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| Symbol | |
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| ID | 8362436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 7879917 |
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| End bp | 7883084 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644968382 |
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| Product | bifunctional preprotein translocase subunit SecD/SecF |
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| Protein accession | YP_003125861 |
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| Protein GI | 256425208 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACTTA AAGGACTGGT TAGATTTTTT GCCGGTGCAT TGATCCTTAT CTCTGTGTAT
TATTTGTCGT TTACGTTCCT GGTACGTAAT TACGAGAAAA AAGTTGCTGC GCAAGCCCAG
AGTGACGTTA CAAAATCACT TCCATCTGCG GAGCAGCAGT ATCCTGGAAA TAAAGAGCTG
CAGGCTGTTT ATTCGGATTC ACTGGCAGAA CTGGTGAAAG AGAGAAGACA AAGGATCCTG
GATAGCACCA GCAACAAAGA AATGGCGGGT TTTCCTTGGT ACGTAACCTA TGACAAAGCC
AAAGAAAAAG AGCTGAACCT GGGGCTTGAC CTTCAGGGTG GTATGAACGT CGTTCTTGAC
GTGAGTGTGG AGGATGTGAT CCGTGCATTA AGCGGTCAAT CCCGTGACGC GGCTTTCAAC
AAAGCCCTGG AACTTGCTGT ACAGCGTAAG AAAACCAGTC AGTCAGATTT TGTAACATTG
TTCGGGCAGG CATATGAAGA AGTACAGCCA CAGGGCCGTC TTTCTACCAT TTTTGCCAAC
GCTTATCAGA AAGATATCGA CTTTAATACA AGCAATTCAA AAGTATTAGA TGTGATCCGT
CGTGAGGCAG GTGCAGCTAT CAAAAATACT TACCTCGTAT TGCAGAAACG TATCGATAAA
TTCGGTGTGG CTTCTCCAAA CATCAGCCTG GATGAAAACA AAGGTATCAT CTCTGTAGAG
CTGGCCGGTG TTGATAATCC TGAGCGTGTG AGAAAATACC TGCAGGCCAG TGCAAACCTG
GAATTCCGTG AAGTATATAA AAATGACGAG CAGTTCATCG CTGGTGTTAT TCAGCCAATG
AACGAAGCGA TCAAAGCTGC TGTAGGCGTT GCTCCGAAAG CTGCAACTGA TTCTACTAAA
AAAGATACAG CCGCTGTAGC AAAAGCTGGT GCTGATACTT CCACTACCGG TAGCCTTGCC
GCTATCCTGG ATGGTAAAGA CAGCGCTAAA GCAGGTAAAG CTGATTCCCT GAAATCAGAC
GCCGAGCGCA GAGCTGAGCT GGCTAAAGCT GAGCCTTTCT TCAGCATCTT CTTCCCAAGA
TATGATCCAA GACAAGGTGT TGCTTTCGGT CCGATCGTTG GCCACATCCT GCCTTCTGAT
ACTGCTACCT TCAGACGTTA TACCGAGATC CCTTCAGTAA GAAATGTACT GCCTAAAGAT
CTGGTATTCG TATACGGTGC AGAAGATAAA GAAAACAAGC GTGCTCCACT GCCTGTTTAC
GCTATCAGAG TAAACCCGAT CAACCCTACT CCACGTGTAA GTGGCGAAAG AGTGATCGAC
GCTAAACAGG ATTATGACCA GAGCGGTCGC CCTGAAATTT CCATGACGAT GGACCAGGTT
GGTGCTAAAG AATGGAAAAA ACTGACCGGC GAACTGGCTC CTACTGATCC TTCTAATGTT
GCTTCTCTGA ACTACGTTGC CGTTGTACTG GATAATATCG TTTACTCTGC TCCATCCATT
CAGGGTGAAA TCGCAGGTGG CCGTTCTTCT ATCTCCGGTA GCTTTACCCT GGAAGAAGCA
AATGACCTGG CAAACATCCT GAAATCAGGT AAAATGCCAG CTCCTGCTAA AATCGTTCAG
GAACAGATCG TCGGGCCAAC CCTGGGTGCT GAATCCATCG CTGCGGGTGC TAAATCTTTC
CTGATCTCTT TCGTAGTGAT CTTCGTACTG ATGCTGGTAT ATTATAATAC AGCTGGCTGG
GTAGCAAACA TCGCCCTGAT CCTGAACCTG CTGTTCACTT TCGGTATCCT CGCTTCCCTC
GGCGCTACGC TGACAATGCC TGGTATCGCG GGTCTGGTAC TCACCATCGG TATGGCTGTG
GATACGAACG TAATCATATT CGAACGTATT AAAGATGAAC TGAGCCGCGG TAAGACTTAC
CAGCAGGCAG TAGAAGACGG TTACAAACGT TCTTACGCTC CTGTACTGGA TGGTCACATC
ACCTCCCTGC TCACAGCGAT TATCCTGTTC TACTTCGGTC TTGGTCCGGT ACTGGGCTTC
GCTACCACTC AGATCCTCGG CTTGCTGCTG TCTCTGTTCT GTGGTATCAT GATCTCCCGT
ATCGTTACTG ACTGGTGGAC TAACAAGAAA AGACACTTCG AATACTTTAC ACCAGTTTCC
CGTAAAATAT TCAAACACGC TGCTTTCGAC TTCGTAGGTA AAAGAAAATA CGCTTACATC
GTATCATTCG TAATGATCGC TTTAGGTGCA TCTTCCTTCT TCCACGGTTT CCGTCACGGT
GTTGACTTCG ACGGTGGTCG TAACTACACC ATCCGTTTCG AACAACCAAT GAAAGCGGAC
GATGTACGTG ATGCACTCGA ACACGAATTC GGTACCGAGC CTTATGTGAA AACAATCGGT
AACAGTAACC AGCTGAGCAT CACTACCAAC TACAAAATCG AAGAACAAAG CGAAGCGGTA
GACAAAGAAG TAACGCAGAA AATGTTCGAC GGACTGAAGA AATTCTACGA ACCAGGGCTG
ACTTTAGAAG CATTCTCTTC TCCAAGGTTC ATCGTAGCAT CTCAGACAGT ATCTCCGACC
ATCTCTGATG ACTTACGTGC AGGTGCGATT AAAGCAACTG TATTGTCCCT GATCGTGATC
TTCCTGTATA TCCTGCTGCG TTTCAGCAAA TGGCAATATT CTATCGGTAC TATCTTCTCC
CTGTTGCATG ACGTGATGGT AACACTGGCT GTATTCTCTT ACTGCCGCGA TATCGTTCCG
TTCGCACTGG AAGTTGACCA GCACTTCATT GCGGCGATTC TGACCGTGAT CGGTTTCTCA
ATGAATGATA CCGTGATCGT GTTCGACCGT ATCCGCGAAT ACTTCCGTAC AGGTACTATG
AAGGGTGCAA GCAGAGACCA GATCATCAAC AAAGCGATCA ACGATACATT GAGCCGTACT
GTGATGACTT CACTGACAGT GTTCCTGACC ATCCTGATCC TGTTTATCTT CGGTGGTGAA
GTAACCCGCG GTTTCGCATT CGCAATGCTG ATCGGTGTAA TCACTGGTAC TTATTCCTCT
ATCTTCGTAG CTGCGCCAGT CCTGGTTGAC TTCGATAAGA ACAACCAGCT GGCTAACGAA
AGCGAAGCAC TTCCTGTAAA AGAAGCTGCC GCTACAGCTA GTAAATAA
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| Protein sequence | MQLKGLVRFF AGALILISVY YLSFTFLVRN YEKKVAAQAQ SDVTKSLPSA EQQYPGNKEL
QAVYSDSLAE LVKERRQRIL DSTSNKEMAG FPWYVTYDKA KEKELNLGLD LQGGMNVVLD
VSVEDVIRAL SGQSRDAAFN KALELAVQRK KTSQSDFVTL FGQAYEEVQP QGRLSTIFAN
AYQKDIDFNT SNSKVLDVIR REAGAAIKNT YLVLQKRIDK FGVASPNISL DENKGIISVE
LAGVDNPERV RKYLQASANL EFREVYKNDE QFIAGVIQPM NEAIKAAVGV APKAATDSTK
KDTAAVAKAG ADTSTTGSLA AILDGKDSAK AGKADSLKSD AERRAELAKA EPFFSIFFPR
YDPRQGVAFG PIVGHILPSD TATFRRYTEI PSVRNVLPKD LVFVYGAEDK ENKRAPLPVY
AIRVNPINPT PRVSGERVID AKQDYDQSGR PEISMTMDQV GAKEWKKLTG ELAPTDPSNV
ASLNYVAVVL DNIVYSAPSI QGEIAGGRSS ISGSFTLEEA NDLANILKSG KMPAPAKIVQ
EQIVGPTLGA ESIAAGAKSF LISFVVIFVL MLVYYNTAGW VANIALILNL LFTFGILASL
GATLTMPGIA GLVLTIGMAV DTNVIIFERI KDELSRGKTY QQAVEDGYKR SYAPVLDGHI
TSLLTAIILF YFGLGPVLGF ATTQILGLLL SLFCGIMISR IVTDWWTNKK RHFEYFTPVS
RKIFKHAAFD FVGKRKYAYI VSFVMIALGA SSFFHGFRHG VDFDGGRNYT IRFEQPMKAD
DVRDALEHEF GTEPYVKTIG NSNQLSITTN YKIEEQSEAV DKEVTQKMFD GLKKFYEPGL
TLEAFSSPRF IVASQTVSPT ISDDLRAGAI KATVLSLIVI FLYILLRFSK WQYSIGTIFS
LLHDVMVTLA VFSYCRDIVP FALEVDQHFI AAILTVIGFS MNDTVIVFDR IREYFRTGTM
KGASRDQIIN KAINDTLSRT VMTSLTVFLT ILILFIFGGE VTRGFAFAML IGVITGTYSS
IFVAAPVLVD FDKNNQLANE SEALPVKEAA ATASK
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