| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6193 |
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| Symbol | |
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| ID | 8362375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 7812873 |
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| End bp | 7815002 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644968321 |
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| Product | OstA family protein |
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| Protein accession | YP_003125800 |
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| Protein GI | 256425147 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.202471 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCACT TAGCAAAATG CGGGCTTCTC CTTGCCGGAC TATTTCTGGG AGGCATCTTC
ACTGCCAGGG CGCAGGAAGC AGAACCTTCG CAGAAAGACA CCACACAGGT TATTCATATC
ATTCAGTCCG ATAAACTGAA TGTACTCACA AAAGACAGCG TACAGCTGAA CAGGTTTATC
GGTAATGCCA TTTTCCGTCA GGGAAATACT TTATTCTATT GCGATAGTGC ATTGATCAAC
AGAAAAGAAA ATGTGCTGGA TGCTTATGGT CATATACATA TTAATCAGGC CGATAGTATT
CACATCTATG GCGAATACCT TCACTACGAA GGAAATACCC GCCTGGCCAC CCTGCGCGAT
AATGCCCGGC TGACCGACGG TAAAGTCACC CTCTCCGGTC CGGAACTCCT CTACGACATG
AATGCCCGTA TCGGCACTTA TGTAAAAGGA GGTAAACTGG TCAACGGTAA AAGTGTACTC
ACCAGCCAGG AAGGTTATTA TTACGCAGAT ACCAAAGACG TATACTTTAA CTACAACGTA
TTGCTGGTCG ATCCGCAATA CACCCTCACT ACCGATACTT TATTATATAA CACCGCCACC
AAAATAGCCA CTATCCTGGC GCCCACCACC ATCAACGATG GCAAGAGCGT CATGTACACG
ACTTCCGGTG AATATAATAC CGAAACAGGC GAGGGTAATT TCGACAGCCG GCCTACCATC
GAGGATAGTA CCGCTACCAT CACCGCCGAC AGGATCACGA TGGATAAACG TACCGGTCTG
GCTTACGCCG TGGGAAACAT GATCTACCGC GATACCGCGC AGAAAATGAC CCTGCTCTCC
AACTATGGTA CCGTAAATCA GATAGAGAAA ACCGTCCTGG CCACCCAGCA TCCGCTGATG
ATCCTGGAAA GGGAGAAAGA TACCCTCTTC CTCGCGGCAG ATAGTCTCTA TTCCGGTATC
GTTAAGAAAG ACACGAATAC AGTCATTGTA AAAGTCACCG CCGACACCGT GAAGCCCGTA
ACCCGTGGCC GCCGCTCCCT GCCAGTGCAG AAAGTGAGTC CGCCGGTCAT ACCAGACTCG
GTCAAAGCAG CACTGCCAGA CTCAATACCG GACATTCCAT CCGATACTTC CGCATTCGCC
AGAAGATTAC AGAACGCCAT AGATCCCGAA AATGCTAAAA AGCAAGCAGT TATGGTCGCT
CCGCCCGGAC CTGATACAAT TCCGAAACTA CCGGACGCAC TGGCCAAACT GGTCGACAGT
ACCAAAGCGC TCAAACCGGA TAGTATCGTA TTGTCCAAAG ACTCCGTCTT AATCGCCTTC
AAAGAAAAAG CGGCCGCACT GGCAAAAGAT ACCAGTAAAC TGCCGCATCC GGCAGGCATC
GTACTGGCGA AAGATTCTAT CGGCATCATG AAGGCAAAAG CCTTGTCTAT ACCAAATGAT
ACCAGCGGCA TGGCCAAAGC CCTGACACTG CCTGCTGATA CCAGCGCACA GAAACAGGAT
ACTACCGAAA TCCGGTTCAT CAGAGCCTGG CACAATGTGC GTATCTATTC TGACTCCCTC
CAGGGAGTAG CAGATAGCTT GTATTATTCC GGCAAAGATT CTATCTTCCG TTTCTACAGA
AACCCGGTAT TATGGGCCAA TGAAACACAG CTGAGCGGAG ACACGATCTT TATGTATACC
AAAAACCAGA AGGCAGACAA ACTGCTGCTG GACCAGAACG GACTACTCGT AAAAGAAGCA
GGACGTAATA TGTATAACCA GATCAAGGGA AACCAGATCA CCGGTTACTT TGCCGGACAA
GCCATTGACT GGATGCACGT GGACGGTAAC GCCGAAAGCA TCTACTACGT TCAGGACGAC
GACAGCGCCT ATGTGAGTGT GAACCGGACC CTGAGTGGTG TCATCAATAT CTATTTCAGA
GAAGGACAAC TGCATACAAT CTCATTCATC AAAGATCCGG AAGGGACGAT GTATCCTTTC
GGACAGCGCC CGATGGACCA GATGAAACTG GAAAACTTCC ACTGGGACAT TAAACGCAGA
CCAAAGAGCA AGTATGAATT GTTCGGTACT GCCGGAGATG TAAAGAAAAA GGAAGAGGAG
GCGCCTAAAA AAGAAGACGA CGAGTTTTGA
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| Protein sequence | MQHLAKCGLL LAGLFLGGIF TARAQEAEPS QKDTTQVIHI IQSDKLNVLT KDSVQLNRFI
GNAIFRQGNT LFYCDSALIN RKENVLDAYG HIHINQADSI HIYGEYLHYE GNTRLATLRD
NARLTDGKVT LSGPELLYDM NARIGTYVKG GKLVNGKSVL TSQEGYYYAD TKDVYFNYNV
LLVDPQYTLT TDTLLYNTAT KIATILAPTT INDGKSVMYT TSGEYNTETG EGNFDSRPTI
EDSTATITAD RITMDKRTGL AYAVGNMIYR DTAQKMTLLS NYGTVNQIEK TVLATQHPLM
ILEREKDTLF LAADSLYSGI VKKDTNTVIV KVTADTVKPV TRGRRSLPVQ KVSPPVIPDS
VKAALPDSIP DIPSDTSAFA RRLQNAIDPE NAKKQAVMVA PPGPDTIPKL PDALAKLVDS
TKALKPDSIV LSKDSVLIAF KEKAAALAKD TSKLPHPAGI VLAKDSIGIM KAKALSIPND
TSGMAKALTL PADTSAQKQD TTEIRFIRAW HNVRIYSDSL QGVADSLYYS GKDSIFRFYR
NPVLWANETQ LSGDTIFMYT KNQKADKLLL DQNGLLVKEA GRNMYNQIKG NQITGYFAGQ
AIDWMHVDGN AESIYYVQDD DSAYVSVNRT LSGVINIYFR EGQLHTISFI KDPEGTMYPF
GQRPMDQMKL ENFHWDIKRR PKSKYELFGT AGDVKKKEEE APKKEDDEF
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