Gene Cpin_6026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6026 
Symbol 
ID8362208 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7623653 
End bp7626016 
Gene Length2364 bp 
Protein Length787 aa 
Translation table11 
GC content48% 
IMG OID644968162 
Productalpha-L-rhamnosidase 
Protein accessionYP_003125641 
Protein GI256424988 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAT TACTCAGTGT GGTAGCGCTC TGCCTTCTTT TGCTACCCGA CTTCAGCTAT 
GCACAATCCG CTGTGTATGC CTCGCAGAGC AGGCCATGGA ATGCCAATTG GATTGCGCCA
CAGAATGAGT CCGGCAACAA TTATGGGGTC TACTATTTCA GGAAAAAAAT TGATCTCCCT
GCAAAACCGT CCAGCTTCAT TATCCATGTA TCAGCCGATA ACCGCTATAA GTTATATGTT
AATGGCATAT TGGTCTCTTT AGGGCCCGCC CGTGGTGATA CCTATTACTG GAATTATGAA
ACGGTAGATC TCGCTCCCTA CCTGACTGCC GGTAAAAATA TTGTGGCAGC CCTCGTCTTT
AATGAGGCCG AAAACCGTCC TGAAGCACAG ATTTCAGTGA GAACGGCTTT TATCTTACAA
GGAAAGGGAC CGGAAGAAGA AATCTTAAAT ACCAATAATT CCTGGAAATA TACACGCGAC
AACGGCTATC AGCCGATTAC CGGCTTCTTT GCCGCCAGTA CCGGCGAATT CGTAGATATG
AACCAATCCG TTAAAGACTG GACAAGTCTC GATTTTAATG ACCACAACTG GCCTGCCGCC
GCTCACCTGT TCCAGGGACA TATCAAGGGC GATGGGGATG GTTTAGCCTG GATGCTGGTA
CCCTCCTCTT TACCACAGAT GGAACTGACG CAGCAACGAT TACCGCTTGT CAGGAAGACA
ACCGGTATTA CACTGCCCGA AACTTTCCCT GCTTCGAAAA CAGCCATTAC CATTCCTGCT
GATACAACAG TATCCTTTAT CCTGGACCAG ACTTTCCTGA CCAATGCCTA TATTAACCTG
CACTTCAGTA AGGGTAAAAA TGCCGGCATA TCCATGCGTT ATGCTGAATC CCTTTATGAT
GATGCGGCAA AGTATGGCGA CCGTAAAGGC AACCGCAATG ATGTGGATGG TAAAGACTTC
AAAGGCAGAA AAGACAGCCT GGTATCAGCC GGCGATATGG GACAGTCTTA TACGACGCTA
TACTGGAGAA CCTTCCGTTA TATCCTGGTG ACAATACATA CGCAGCAGGA GCCATTGATA
ATAGACGACA TCTCCGGTGT ATTTACCGGC TATCCCTTTA CATTTAACGC AGCTTTTAAT
ACACAGGATA ATGAGTTAAA ACAGATATTG GATATCGGCT GGCGTACTGC CCGTCTATGC
GCTATGGAGA CCTATTTCGA TTGTCCTTAT TATGAACAGT TGCAGTACAT AGGCGATACG
CGTATACAGG CGCTGATCAG CTACTACAAC AGCGGTGACG ACAGACTGGC ACGCAATGCC
ATCGACCTGA TGGATCATTC CCGTATTACT GAAGGCGCCA CACAAAGCCG CTGGCCAACC
CGTAGCACGC AGATTATATC CACCTTCTCC TTATGGTATA TCGGTATGTT ACACGATTTC
TGGATGTACA GACCTGACAG TAGTTTTATC CGAAGTAAAC TGACAGGAGA ACGTGCCGTA
CTCGACTTTT TTAGCCGCTA CCAGGGCCAG GACGGTTCCT TGAGAAGTAC TCCTTACTGG
AACTTCATAG ACTGGGTCGG TGGCAAAGGA TGGAACTTTG CCATGCCGCC TAAAGGCGCA
GACGGAGCAT CCGCGATCCT TGATCTGCAA TTACTGATGG CCTACCAATG GGCAGCCGAA
CTCGAAGCCA GCATGGGGAT GCCCGCATAT GTCGCTTTGT ACAAAAGCAA GGCAGCCCTG
CTAAAAACAA CCATCCGGAA CAAATACTGG AATGCCGGCA GAAAACTATT CGCAGATACT
GACGAAAAAG ACGTCTATTC ACAACACGCC AATGCACTCG CTATATTGGC GGGTGTAGCC
AATCAGCAGG ACCTGTCTGA CATCTGCCAG CAACTGCTGA CGGATAAATC CCTCACACAA
TGCACCATCT ATTTCAAATA TTACCTGCAC CTGGCACTGG CCAAAGGTGG CCTTGGTAAT
GATTACATCA AATGGCTGGA TGTATGGCGG GACAATATCA AAATGGGATT AACCACCTGG
GCCGAAATAT CCGATCTGCC CAACAGCCGT TCCGACTGCC ACGCATGGGG CGCCAGTCCT
AACATCGAAT TCTTCCGGAT GATCCTGGGC ATCGACACCG ACGGACCAGG CTTCCGCAAA
ATAAAAATAA CGCCGCACCT GGGAGATTTG AAGAATATCA GCGGAGAGAT CCCGCATCCA
AACGGAAAGG TCGCTGCTAC TTATACTTTC GACAGGAATA AGTGGAAAAT AAAAATCCAC
TTACCGGCGA AAACTACCGG CACCCTGCTA TGGAAAAACA AAAAGTATCC GCTTAAAACC
GGAGAGAATT TATTAGAGAT CTAA
 
Protein sequence
MKKLLSVVAL CLLLLPDFSY AQSAVYASQS RPWNANWIAP QNESGNNYGV YYFRKKIDLP 
AKPSSFIIHV SADNRYKLYV NGILVSLGPA RGDTYYWNYE TVDLAPYLTA GKNIVAALVF
NEAENRPEAQ ISVRTAFILQ GKGPEEEILN TNNSWKYTRD NGYQPITGFF AASTGEFVDM
NQSVKDWTSL DFNDHNWPAA AHLFQGHIKG DGDGLAWMLV PSSLPQMELT QQRLPLVRKT
TGITLPETFP ASKTAITIPA DTTVSFILDQ TFLTNAYINL HFSKGKNAGI SMRYAESLYD
DAAKYGDRKG NRNDVDGKDF KGRKDSLVSA GDMGQSYTTL YWRTFRYILV TIHTQQEPLI
IDDISGVFTG YPFTFNAAFN TQDNELKQIL DIGWRTARLC AMETYFDCPY YEQLQYIGDT
RIQALISYYN SGDDRLARNA IDLMDHSRIT EGATQSRWPT RSTQIISTFS LWYIGMLHDF
WMYRPDSSFI RSKLTGERAV LDFFSRYQGQ DGSLRSTPYW NFIDWVGGKG WNFAMPPKGA
DGASAILDLQ LLMAYQWAAE LEASMGMPAY VALYKSKAAL LKTTIRNKYW NAGRKLFADT
DEKDVYSQHA NALAILAGVA NQQDLSDICQ QLLTDKSLTQ CTIYFKYYLH LALAKGGLGN
DYIKWLDVWR DNIKMGLTTW AEISDLPNSR SDCHAWGASP NIEFFRMILG IDTDGPGFRK
IKITPHLGDL KNISGEIPHP NGKVAATYTF DRNKWKIKIH LPAKTTGTLL WKNKKYPLKT
GENLLEI