| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5946 |
|---|
| Symbol | ddl |
|---|
| ID | 8362127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7549587 |
|---|
| End bp | 7550576 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644968085 |
|---|
| Product | D-alanyl-alanine synthetase A |
|---|
| Protein accession | YP_003125565 |
|---|
| Protein GI | 256424912 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.588243 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0506502 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA ACATCGCCCT GGTAGCCGGT GGATACTCCG GTGAATATGT AATTTCAGTT
CAAAGTGCAG CCGTAATAGA GAAACATCTT GACAGCAGCA AGTATAATGT CTATAAGATC
TCTGTTACCC GCGATGGATG GAACTACACA GGTTCCGATG GTCAGCTGAT CGCAGTAGAC
AGGAACGATT TTACATTGAC TATCAATGGG AATAAGGTGA TATTCGACGC TGTTTTCATC
GGTATACATG GTACGCCGGG TGAAGATGGC CGTCTGCAGG GATATTTTGA AATGCTTGGC
ATTCCATTCA CCAGCTGTGG AATGGTTACG TCGGCCCTGA CATTCAACAA GAGCTACTGT
AACAAGGTAG TCGCTTCTCT TGGTGTTGTA AATGTTTCAA AATCAGTACA TATTTTCAAA
GATCAGCCTT TTGATATCCA GGCTATCCTC CAGGAACTGA AACTGCCCGT GTTTGTGAAA
CCGGCAGAAG GTGGCAGCAG CATCGGGATG TCCAAAGTGA ACACGGCAGA AGAACTGGCG
CCGGCTATTG AAAAAGCCTT TAATGAAGAT GTACAGATCC TTATAGAAGA GTTTGTGAAA
GGCAGAGAGA TCACCTGTGG TCTCTACAGA TCAAATGGTG CATTTACCGT ACTGCCTGTA
ACCGAAATCA TCAGCAGCAA AGAATTCTTC GATTACGAAG CGAAATATAC CCCGGGTGTA
TCCAGAGAGG TAACGCCTGC GGAAGCGCCA AATGAAATAG TGAACCAGAT TCAGGAGACT
GCTAAAAAGC TGTATAATAA ACTGAACTGC CGTGGTATTG TGAGAATGGA CTTCATCTGG
GAAGAAGCCA GCAACCGTTT GTTCTTCCTG GAAGTGAATA CGATGCCGGG ACAGTCTGAA
AACAGCATCG TTCCTCAGCA GGTAAGAGCC GCTGGTAAAA CCCTGCAGGA GTTTTACGGC
ACATTAATTG AAGAATGCCT GAGGAAATAA
|
|---|
| Protein sequence | MKKNIALVAG GYSGEYVISV QSAAVIEKHL DSSKYNVYKI SVTRDGWNYT GSDGQLIAVD
RNDFTLTING NKVIFDAVFI GIHGTPGEDG RLQGYFEMLG IPFTSCGMVT SALTFNKSYC
NKVVASLGVV NVSKSVHIFK DQPFDIQAIL QELKLPVFVK PAEGGSSIGM SKVNTAEELA
PAIEKAFNED VQILIEEFVK GREITCGLYR SNGAFTVLPV TEIISSKEFF DYEAKYTPGV
SREVTPAEAP NEIVNQIQET AKKLYNKLNC RGIVRMDFIW EEASNRLFFL EVNTMPGQSE
NSIVPQQVRA AGKTLQEFYG TLIEECLRK
|
|---|
| |