Gene Cpin_5938 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5938 
Symbol 
ID8362119 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7541215 
End bp7541922 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content49% 
IMG OID644968077 
Productputative esterase 
Protein accessionYP_003125557 
Protein GI256424904 
COG category[S] Function unknown 
COG ID[COG4947] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0188023 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.39769 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGAAC AACATTACAA ATGGCATTCC CCGCACCTGG GCCATGAATT TGAAATGCTG 
GTGTACGGAG AAGAGGGCTA TCCGCTGATA CTCTTCCCTA CCTCCATGGG AAGGCATTAT
GAGCACAGAG ACAGGGGTGT GATACAGTCA TTGGAATGGT TTATCAACAA CCAGCTGATC
AAGGTGTACT GTCCGGATAC GGTGGACGTA CACAGCTGGT ACAACATACA CATTTCCCCT
GCTGAAAGAG CCCTTCATCA TATCAGATAT GACCGTATGC TCCGCCACGA GGTACTGGAA
AAAGTGACCG AAGAAACAGG CGTTCAACGC ATTGCGGTAG CCGGATGTAG TTTCGGTGGT
TATCACGCAG CCAACTTTGC CTTCCGGTAC CCGGAAAGAG TATCCTACCT GTTCAGCCTC
AGTGGTGTTT TTGATGTAAA ATCCCGGCTG AACGGCCATT ATGACGACAA TGTGTATTAT
AATAACCCGG TAGATTTTAT GCCGGCAAAT CCGCATGAAG CCCTTTGGCG GATGGGAATT
ATACTGGGCG TAGCTGAAAA AGACATTACC CGTAGCCAGA ATGAGACAAT GTCCGGCATC
CTTCATAATA AAGGCATTAT GCACTGGCTG GACGTAAGGC CCAACAAGAC ACACGACTGG
CCCACCTGGC TGGAGATGCT GCCTTACTAC CTGTCCCTGA TCAAATAG
 
Protein sequence
MLEQHYKWHS PHLGHEFEML VYGEEGYPLI LFPTSMGRHY EHRDRGVIQS LEWFINNQLI 
KVYCPDTVDV HSWYNIHISP AERALHHIRY DRMLRHEVLE KVTEETGVQR IAVAGCSFGG
YHAANFAFRY PERVSYLFSL SGVFDVKSRL NGHYDDNVYY NNPVDFMPAN PHEALWRMGI
ILGVAEKDIT RSQNETMSGI LHNKGIMHWL DVRPNKTHDW PTWLEMLPYY LSLIK