Gene Cpin_5858 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5858 
Symbol 
ID8362038 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7440859 
End bp7441329 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content47% 
IMG OID644967996 
ProductPEBP family protein 
Protein accessionYP_003125477 
Protein GI256424824 
COG category[R] General function prediction only 
COG ID[COG1881] Phospholipid-binding protein 
TIGRFAM ID[TIGR00481] Raf kinase inhibitor-like protein, YbhB/YbcL family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0880759 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.677291 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTATGG AAAACAATAC AACAAAAACC TTGAAGATCT CAAGCAGTGC TTTCGATCAT 
GAAGGTGTGA TCCCTTCAAA GTATACATGT GAAGGAGAAG AAGTCAATCC ACCCTTACAA
ATCGACCAGA TTCCGCCTGA AACACAGACA CTGGCTATCG TCATGGAAGA TCCGGATGCG
CCAAAGGGAA CTTTTGATCA CTGGTTGGTA TGGAATATTC CTCCTGCTAC GAATATCATT
GGCGGAGACA GTGTACCGGG TATCTGCGGG AAGAATGGCG GCGGACAAAC AGGTTACTAC
GGACCTTGTC CACCTTCCGG CGTACATCGT TATTATTTCT ATGTGTATGC GCTGGATACG
ACACTCGACC TGGATGGCGG AGCAGATAAA GCAGCATTGA AAGCTGCAAT AGAGGGGCAT
GTGATTGCGG AAGGCGTTTT AATGGGGAGG TATGAGAAGA AGGGACTTTA A
 
Protein sequence
MGMENNTTKT LKISSSAFDH EGVIPSKYTC EGEEVNPPLQ IDQIPPETQT LAIVMEDPDA 
PKGTFDHWLV WNIPPATNII GGDSVPGICG KNGGGQTGYY GPCPPSGVHR YYFYVYALDT
TLDLDGGADK AALKAAIEGH VIAEGVLMGR YEKKGL