| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5707 |
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| Symbol | |
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| ID | 8361887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 7273759 |
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| End bp | 7276167 |
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| Gene Length | 2409 bp |
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| Protein Length | 802 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644967849 |
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| Product | leucine-rich repeat protein |
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| Protein accession | YP_003125330 |
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| Protein GI | 256424677 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCAT CCCCCCTGCC AAAACTCATT AGTAACGACG AAGCATTGCT TCGCTTTCAT
CTGGAACAGT TCGAAAACTT TAGCGAAACA GCCTTTCAAA ACGTCCTTCT ATTGGATGGA
GATACCACCA TCGACGGCGA CCTGGACCAG CAATGGACAG AAAACACATT GGCATCACTA
GGCGTAGCCG GTGGAGTGGA AGACACCCTG ATCCTTGTAA ATGGCAACTT ACAGGTAGCG
GGTACAATAA AACCTTCTGA AGATACTTAT CCCTTTTTGC TGGTATTAGG GAATGTTCAA
TGCGAGGTCA TTAAGAGTTA TGACGAGTTC ATTTATATCA CCGGAGATGC AGATATAAAA
TATGCATTGG ACGGAAATTA TAATCATGGT GACATTACAA TTGACGGTAT CACCCGCGTA
CCCTATATAT TAATTTCGGA TCATAGCACA TCTGTGAAGC CGGAAGGAGC TATTCTGATC
AACTACTTCA GTGATCGGGA CGATTTTTTT GCCTATGATT TTACGGTAGA AGACTTTGAG
CGTGTAATGG CGCCTGAAAC GTTTAATGAG AAAGGGAACT TCAGTCATTA TGCATTTATA
GAGGTACTCA AAACGGGCAA GTCTCCTTTA AAGGAAGGCG CACGCCCGGC AAAGCTGATA
CTTTTGGATG AATTAGAACA ATTAGGTAAG GAGAACAGCA TAGAAACGCT GGATCTTTCC
GACAAAAAGC TGAAAGTATT TCCACTGGCA GTCACCAAAA TCACCTCGCT AAAAAAACTT
ATCCTGAGTG ATAACCCTAT AAAAAACATA CCTGCATCAA TAAAGGACCT GGTAAATCTG
GAGGAGTTGC ATGTGGAAAG ATGCAGCTTA GAAAATCTGC CGGATGAAGT TTTTACATTA
AGCCAGCTTC GGGTACTGAA TGTAGCCCGG AACCATAGTC TGCAACTGCC TGAAACTATC
AATGCGCTGA CCTCTCTGCG GACATTGTCT GTGTCGTATA ATACAGGGTT TGGATTGCCT
GCAAATGTGG CCGGGTTAAA TAAACTCGAA GAGCTGACCT GCTATCAGTG TACCACATCT
GCGCCTATAG ACTTTCCGGA GGTACTCACG CAACTGACCG GATTAAAACG ATTGCTGATG
GGCAGCAATT CTATCAAAAC CATTCCTGAA AGCTTTTTCA AGCTGCAACA GCTGGAAGAA
CTGGACCTGG ATGCGAGCCT CTGTTATTTA AATGAAATAC CAGATCTGTC GAGGCTAAAA
AATCTGAAAA CGCTACATGC CAACGGGTTG ATTTCTTACA CTACCCGTCC TTCACCCAAA
CAGCATTTAC TTAAATCATT CTTTGCAATC ACTACCCTGG AAGCATTGTA TATTGACCGG
CATGGTGAGC GCAAGGAAGC ATTTATTAAA CAAGATGCGT TTAAAGAGAT AGAGGAGAAC
CTGTCCCATG ATCCGGAAAG GTTTCAGGAA TTTGCGGACA AATTAACCAT CGTTCCCAAT
ATGGTTTGGG GCGATGGACG AAAGGGCATC GTGCGGGAAG CGCTGACAGT GGAACATCTG
GCGGGCATAT CAAATTTACA GCAGCTGAAG ATGCTGGATC TTTCATTCAA TGGCCTTACC
AGTGTACCTG ATGAACTTTT CACATTAAAG CACTTACAAT ACCTGGACCT GCGTTACAAC
CGGCTTTCAA CCAGCCAACG GCTAAAGATT GCCAGAAATC TACCTGACTG TACGATTGAC
TTCCGCGATA ACCGGGTTGA AGATGAACAA ACAAACAATG AAGATGTGCT GCAATGGCAG
GCTATGAATG CCCTGATGCA CAAAGCAAAT GTCCTGATGG GCACCAAAAA CGACCGGGAA
AAACTCCTGG AATCGCTACA TGTGTATGAT GAAGTACTGT CTTATTTTAG CTCGGGGAAG
GTGGTGGATG AATACAACCT GCTGTATGCA AACTATGGGA AAGTATACGC GTACAGTTAC
TTAACCTCCA CTCATAAAGC TTCATTTCCA GCAAACGAGC TACAGCAATT AATGAAGGAC
AGTATTGAAC ATGGATTGCA TACGCTTAGT CTGGTGCCGG CAATGATCTG GCATTTCACC
AATCTGGGTG CATTTCATGA GGAGGTAACC CGTATTACCG CTAACTCGGT AGCCTGGAAT
CTGCATGTGT TGGCTGATTC AGAAGAAGAA CTGACAAAAG CACTCCGCAT CATTGAAAAA
GCCATTCCTT ATAGCGATAG TGAGCCTTAC TATTTTATTT ATGATACCCA GGTAAGGATA
TTATTAAAAC TGGGAAATAA GGAAGAGGCG TACCAGACAG TGAAGGGGAT ATTAAGAAAA
TCGCCTGATT TCGTGGATTT CCAGGACTTC AAAACAAATG CAGACTATTT AGCCTGGTTA
GAAAAATAA
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| Protein sequence | MTSSPLPKLI SNDEALLRFH LEQFENFSET AFQNVLLLDG DTTIDGDLDQ QWTENTLASL
GVAGGVEDTL ILVNGNLQVA GTIKPSEDTY PFLLVLGNVQ CEVIKSYDEF IYITGDADIK
YALDGNYNHG DITIDGITRV PYILISDHST SVKPEGAILI NYFSDRDDFF AYDFTVEDFE
RVMAPETFNE KGNFSHYAFI EVLKTGKSPL KEGARPAKLI LLDELEQLGK ENSIETLDLS
DKKLKVFPLA VTKITSLKKL ILSDNPIKNI PASIKDLVNL EELHVERCSL ENLPDEVFTL
SQLRVLNVAR NHSLQLPETI NALTSLRTLS VSYNTGFGLP ANVAGLNKLE ELTCYQCTTS
APIDFPEVLT QLTGLKRLLM GSNSIKTIPE SFFKLQQLEE LDLDASLCYL NEIPDLSRLK
NLKTLHANGL ISYTTRPSPK QHLLKSFFAI TTLEALYIDR HGERKEAFIK QDAFKEIEEN
LSHDPERFQE FADKLTIVPN MVWGDGRKGI VREALTVEHL AGISNLQQLK MLDLSFNGLT
SVPDELFTLK HLQYLDLRYN RLSTSQRLKI ARNLPDCTID FRDNRVEDEQ TNNEDVLQWQ
AMNALMHKAN VLMGTKNDRE KLLESLHVYD EVLSYFSSGK VVDEYNLLYA NYGKVYAYSY
LTSTHKASFP ANELQQLMKD SIEHGLHTLS LVPAMIWHFT NLGAFHEEVT RITANSVAWN
LHVLADSEEE LTKALRIIEK AIPYSDSEPY YFIYDTQVRI LLKLGNKEEA YQTVKGILRK
SPDFVDFQDF KTNADYLAWL EK
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