| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5643 |
|---|
| Symbol | |
|---|
| ID | 8361820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7195574 |
|---|
| End bp | 7197172 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644967784 |
|---|
| Product | putative symporter YidK |
|---|
| Protein accession | YP_003125268 |
|---|
| Protein GI | 256424615 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4146] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0528726 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.86029 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTTG GGGCTTTACT GAGTTTTCTG CTGGTAACCA TCTTTGTGGC GTTGATTTCC
TGGTATAAAA CCCGGAGAGA AAACCTGCAG ACTGCCGCGG GCCTCTTTTT TGCCAACCGT
AACCTGGGTT TCCTCGTTGT CGGTGGCGCC CTGTTCTTTA CAAATATCAG CGCAGTACAG
TTTATTGGTG AGAATGAGCT TGTCTATACC AATAACATGA GCGTCATGGC CTGGGGGCTA
TCCTCGGTAT TTGCCATGTT GCTGGTATCC GAGTTCATTA TGCCGGTTTA CCTGCGCAGC
GGTATCTCTA CAACACCTGA TTTTCTTGAA GAAAGATATG ACACCGGCAC GAAGCGATTC
GTGTCGGTGA TCTTCCTTGT CAGCTATATT GTCAATATGC TGCCTTCTGT ACTGTACAGT
GGCGCTATTT CCTTTAACGG CTTATTCCGG GTATCAGAAA CCCTGCATAT CGATTACTGG
GTCACGATCT GGATACTGGT ATGGCTGATC GGGTTTATTG GCTGTCTGTA TACGATCCTC
GGAGGATTAA AAGCCGTGGC TATCTCAGAT ACTGTATTGG GAGTGGGGAT GTTTGCAGGG
GGGATTTTAC TGCCTTATGC CGCCCTGAAA TACCTGGGAC ATGGTTCCGC AGGCACAGGG
CTGGATATAC TATTAGCTTC CCGCAGGGAC CATTTTAATG CGATTGGCGG TCCGCAGGAT
GCCGTTCCTT TTCCTACTAT CTTCACCGGT ATGTTCCTGG TGAACCTCTA TTACTGGGGT
ACGGAGCAAT ATATTGTACA ACAGGCGCTG GCCTCCCGTA GTCTGGCGGA AAGCCAGAAG
GGGATTGCCG TCGCCAGTGT GGGCAAGATC ATTTCCCCGC TGCTGCTGAA TATACCTGGT
CTGATTGCGG TATTGCTGTA CCCTCACCTG ACGAATACGG CGGAAGTCTT TCCTAAGATT
GTCAGCGATG TCTGTTCCCC GATGCTGACC GGCTTTATTG CTGCTATCAC TTTTGGGGCT
GCCCTGACCA CTTTTAATGC AGGTTTGAAC AGTACCAGCA CCCTGTTTGT ACTGAACCTC
TATAAGCCCT TTAAAGCCTG GCGACAGGAA GCAGTGAGCG AGCGTCAGCT GGTACGCGTC
AGCCGGCGTT TTGAATTACT GGTCTGTTTA CTGGCCATGA TCATCGCGCC TTTTATCGTT
TTCGCACAGC AGGGACTATA TACTTATATC CAGATGGTCA GCGGTCTTTT CAGTGTGCCT
ATTTTTACCA TCCTGTTCCT GGGATTGGTC CATAAGCGGA TGCCGGCCAT TGCGGCAAAG
ATGGGACTGA CCTTCTTTAT CCTTACCTAT TCTATTGCAC AGTTTGTCGT GGATACGGGT
CTGCATTTCC TGCATGTGCT GTCGATCTTG TTTGTGGCGA CGGTACTACT TATGTTAGGA
GTAGCGGCTA TTGCGCCCCG TAAGGAGCCT TTTGTACAGC AATGGAATAA TGTAGTAGAT
CTGCAACCAT GGAAACAAAG ACATATTTAT ACTGTGTTGC TGTTATTGGC AATGGTGGCC
TTGTTTGTGA TTTTCTCCCC CCTTGGATTA GCAAAATAA
|
|---|
| Protein sequence | MNVGALLSFL LVTIFVALIS WYKTRRENLQ TAAGLFFANR NLGFLVVGGA LFFTNISAVQ
FIGENELVYT NNMSVMAWGL SSVFAMLLVS EFIMPVYLRS GISTTPDFLE ERYDTGTKRF
VSVIFLVSYI VNMLPSVLYS GAISFNGLFR VSETLHIDYW VTIWILVWLI GFIGCLYTIL
GGLKAVAISD TVLGVGMFAG GILLPYAALK YLGHGSAGTG LDILLASRRD HFNAIGGPQD
AVPFPTIFTG MFLVNLYYWG TEQYIVQQAL ASRSLAESQK GIAVASVGKI ISPLLLNIPG
LIAVLLYPHL TNTAEVFPKI VSDVCSPMLT GFIAAITFGA ALTTFNAGLN STSTLFVLNL
YKPFKAWRQE AVSERQLVRV SRRFELLVCL LAMIIAPFIV FAQQGLYTYI QMVSGLFSVP
IFTILFLGLV HKRMPAIAAK MGLTFFILTY SIAQFVVDTG LHFLHVLSIL FVATVLLMLG
VAAIAPRKEP FVQQWNNVVD LQPWKQRHIY TVLLLLAMVA LFVIFSPLGL AK
|
|---|
| |