| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5610 |
|---|
| Symbol | |
|---|
| ID | 8361787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7163252 |
|---|
| End bp | 7164049 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644967753 |
|---|
| Product | band 7 protein |
|---|
| Protein accession | YP_003125237 |
|---|
| Protein GI | 256424584 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.606547 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.386273 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGA AAAAAATCCG ATCGATTGTC CTGTTGGTCA TTGTGGTCGT TGTAATCCCT
GTATTCTGTA ATTTATGTTG CACGAGAATT GATGCCGGTC ATGAAGGTAT CAGAGTAAAA
CAATATGGTA CTGATAAAGG GGTACAGGAT ATTTCACTGG TAACAGGACG GGTATGGTAC
AATCCGTTGA CTGAATCCGT GTATGAATTC CCGATCTTCG TACAGACAGC TGATTATAAT
CCATTTACGG TGAATGCAAA GGATGGGTCC GTATTTACAG TAGATCCTAC CATTACTTTC
CGTGTATTGC CGGGTAAAAG CCCCGAGATC TTCAAGAAAT ACCGTAAGGG TATCGATGAA
ATCACAAAGA CAACCTTATA CAACTATGTA AGAGACGCTT TCCGTATACA GTTCAACAAG
TATACGACTG ATAGCATGAT CAGCAGCAGG GAAGGATTTG AGAATGCGGT ACAGATACAA
TTGTCTGAAT CCATGAAAAG GGAAGGTTTT GACCTGGAGC AGCTGACCAG CGGTATCGAG
TATCCTGAGA CGATCACACA GGCGATTGAC GCGAAAAACA GGGCTGTACA GCAGGCGATG
CAGGTTGAAA ATGAGCTGAG GGTAACAGAA GCGAATGCGA AAAAGCTCAT TATTCAGGCA
GAGGCAGAAG CAAAGGCAAA TCTGCTGCGT CAGCAGTCTT TGACTCCATT GCTCATTCAG
CAACAGTTCA TCGAAAAATG GGACGGAAAA ACGGCTTTAT ATGGCAGTTC TCCGACCTTC
TTCAAGAATG TGCAGTAA
|
|---|
| Protein sequence | MNQKKIRSIV LLVIVVVVIP VFCNLCCTRI DAGHEGIRVK QYGTDKGVQD ISLVTGRVWY
NPLTESVYEF PIFVQTADYN PFTVNAKDGS VFTVDPTITF RVLPGKSPEI FKKYRKGIDE
ITKTTLYNYV RDAFRIQFNK YTTDSMISSR EGFENAVQIQ LSESMKREGF DLEQLTSGIE
YPETITQAID AKNRAVQQAM QVENELRVTE ANAKKLIIQA EAEAKANLLR QQSLTPLLIQ
QQFIEKWDGK TALYGSSPTF FKNVQ
|
|---|
| |