Gene Cpin_5501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5501 
Symbol 
ID8361678 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7015246 
End bp7016277 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content50% 
IMG OID644967647 
ProductNADH:flavin oxidoreductase/NADH oxidase 
Protein accessionYP_003125131 
Protein GI256424478 
COG category[C] Energy production and conversion 
COG ID[COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.206869 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.000501285 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTATCCAA CATTATTATC ATCCGCTACT ATAGGCAATT ATGCCATTTC AAACAAGGTG 
GTGATGGCGC CCACCGCTGG TAAAAGTCAC GTACCTGCAG GTATACCCAA CGACGTGACC
GTCAACTACT ACAGCCAGAG GGCCAAAGCC GGCCTGATCA TCGCAGAGGG AACCGGTCCT
GCAGAAAACG GTATGGGCCA GGCGCACATG CCAGGAATTT ATAGCAAGGA CCAGATTTCA
GGATGGAAGA AAGTAACAAA AGCCGTACAT GAAAACGGTG GCCGGATCTT CCTGCAGATC
AAACACACAG GGCGTATATC ACACCCTGCC AACATGCCGG CTAAGGCAGA CGTAATAGCT
CCTTCGGCTA TAACAGCCAA AGGTGAGATA TGGACAGAGA AACTGGGCTG GCAACCACAT
GCCACTCCAA GAGCAATGAC TACATCAGAG GTAGGAAAAA TGGTCCAGCA GTATGTAAAG
GCAGCAACAC AGGCAATAGC AGCAGGTTTC GACGGAGTGG AAATACACGC AGCGCATGGA
TATTTAATGG ACCAGTTCCT GCACCCTGAT ACAAATCAAC GGACAGACAA ATACGGCGGC
AGTATTCCTA ACAGGGTGCG CTTTGTACTC GAAGCCGTCG CAGCTGTCAG TCACGCAATA
GGCAGGCACC GTACAGGCAT CCTCCTGTCT CCTTACAGCC AGGTCAATGA CCTGCAGCAT
CACAATCAGA TAGACGCTAC TTACGAATAC CTGACAGATG CTCTGGATAC TTACGGATTG
TCTTACATAC ACCTGCTGAC TGAAACGGCA ACTCCCGCCA CACTGATTGC TGGCATACGT
TCCCGCTTCA ACGGAACACT GATCTTAAAT GGTGATTATG ACGCCCTGAG CGCAGAACAA
ACAGTGCAGA ATGGCCTGGC TGATCTGATC GCGTTTGAGA ATCCATGTGT CTCTTCTCCT
CTCTCCGGTA AGTTTGCAAC AACTTCCAGT GAGCCGTTAA AAAAGCCCAA TTACGCTTGT
GCGAATTGTT AA
 
Protein sequence
MYPTLLSSAT IGNYAISNKV VMAPTAGKSH VPAGIPNDVT VNYYSQRAKA GLIIAEGTGP 
AENGMGQAHM PGIYSKDQIS GWKKVTKAVH ENGGRIFLQI KHTGRISHPA NMPAKADVIA
PSAITAKGEI WTEKLGWQPH ATPRAMTTSE VGKMVQQYVK AATQAIAAGF DGVEIHAAHG
YLMDQFLHPD TNQRTDKYGG SIPNRVRFVL EAVAAVSHAI GRHRTGILLS PYSQVNDLQH
HNQIDATYEY LTDALDTYGL SYIHLLTETA TPATLIAGIR SRFNGTLILN GDYDALSAEQ
TVQNGLADLI AFENPCVSSP LSGKFATTSS EPLKKPNYAC ANC