| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5481 |
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| Symbol | |
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| ID | 8361658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6989227 |
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| End bp | 6991704 |
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| Gene Length | 2478 bp |
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| Protein Length | 825 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644967627 |
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| Product | LmbE family protein |
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| Protein accession | YP_003125111 |
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| Protein GI | 256424458 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2120] Uncharacterized proteins, LmbE homologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.048486 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAAAAG GATTCTGTTT AACACTGATT TCAGGACTGG TCGCCGTTAC CGCATGGGCT
CAACGCTCTC CGCTGATCAA TGCGGCAGAT ATAAAACTGC AACTCAAAAA ATTAGATACG
CTGGGTAGCG TATTATATAT CGCCGCTCAT CCTGACGATG AGAATACCCG CCTGTTGGGA
TACCTGGCGA AAGACAAGTT ATATCGTACC GGCTATCTCT CTCTCACCAG GGGAGATGGT
GGTCAGAACC TCGTAGGGGA CGAACAAGGC GAATTACTGG GACTGATCCG TACCCAGGAA
TTGCTCGCTG CCCGCCGTAT TGATGGCGCA GAACAGTTCT TCACCCGCGC ACTGGATTTT
GGCTTCTCCA AGAATCCGGC AGAGACATTC ACCATCTGGG ATAAAGAAAA GATCCTGGGG
GATGTAGTCT GGATGATCCG TAAATTCCAG CCGGACGTTA TTGTATGCCG TTTCCCGCCG
GACAGTCGTG CGGGTCATGG TCATCATACC GCATCTGCTA TGCTGGCTGA AGAAGCTTTC
GAAGCAGCGG CAGATCCAAA ACGTTATCCT GAGCAGCTGA AACAGCTGAA GCCATGGAAA
GCACATCGTA TTATGTGGAA TAGCTTCAAC TGGGGTGGTG CGATCGATAA TTCCGCCGGA
CTGCTATACG AACTGAACGT GGGTACCTTC AATTACCTGC TGGGTCGTGG TTATGGTGAG
ATTGCCGCTG AAAGCCGCTC ACAGCATAAG AGCCAGGGTT TTGGTGTTGC TGCAACAAGA
GGTAGCTCCT ACGAATATTT CGCTCCTGTA AAAGGAGATA AACCTGTGTA TAGTCTGCTG
GATGGGGTGA ATACCACCTG GACCCGTATC GCTGGTGGTA AGCCGATCGG GGAGATGGTT
GACAAGGCGC AGGCCAACTT CAATATAGAA GATCCTGCTG CTTCCGTACC AGCCCTGCTG
GAAATCCGTA AAGCCATACA GGCCCTGCCG GAAGGTTACT GGCGTACGCA GAAACTGAAA
GAGACAGAAG ACCTGCTGCT GGCTTGTGCC GGTCTCTGGA TGGAAGCCTA CAGCAATGCG
CAGGTAGTCG TACCTGGACA GCCGATGCAG GGTAGCGTAC AGTTGCTGTG CAACAGTAAT
GCTAATGTTA TGGTTGATCA GATCACTTTC GGTGGAAAGG ATACCGTATT TAATAAACTG
CCACTGGAGT TTAACCGTCT GCGTACTATC AATGAATCTA TGACCCTGCC AGCCGGACTG
GCGGAGTCAC AGCCTTACTG GTTACAGGAT CCACATCCGA TTGGCATCTA TACGATCAAA
GATCCGATGA TGGTGGGTTA TCCGGAGAAC AAACCCGCGC TGGAAGCCGT GATCAAACTG
CGTATCAATG GAGAGCAGCT GACCGTTACC AGACCGGTAC AATACAAATT TACCGATCCT
GTTAAGGGGG AATTATATGA GCCATTGGTG GTTGCGCCAC CGGTAGTGGC TACACTGAAC
AACAGCGTAT TCATTTTCAC CCAGACCCAG TCTCAGCCTG TACAGGTAAA ACTGCGTGCG
ATGGGACTGC CCAATAAAGG CACAATACGG CTGCAGTTGC CTGCCGGCTT TACCAGCCAG
GAAGCAGAGC AGTCCTATGA ACTGTCTTCC AAAGGAGACG AAACAGCGGT AACTTTCCAT
ATCGCACCGC AGAAAGTGGC CGGTATCAAT CGTACCGATA CCCTGCGCGT AGAGATCCGT
AGTGAAGGAA AAGTATATAC ACAAAGCATC CGCACGATTG CATACGATCA CATCCCTGAC
ATCAATATCT TCCCTGAAGC AATTGCAAGA CTGGTAACAG TCGACCTGCA ACGTAACGGC
CGTAAACTGG GATATATTTC CGGTGCAGGC GATATGGTGG CTGCTTCTCT CAGACAGGTA
GGCTACGAAG TAACGATCCT GGATGAAAAG GAAATCATGA ACGGCGATCT GCAACAATAT
GATGCGATCA TTGCCGGTGT AAGGGTATAT AATATTAATC CACGTATCAA ATACTGGCAG
CCCCGCCTGA TGGAATATGT TAAGAACGGC GGTACCTACC TGGTACAGTA TAATGTCAGT
TCTCCACTGG TGACCACTGA TATCGGACCT TATCCGTTTA CGCTTACCCG TGACCGTGTA
ACCGATGAAA ATGCAGCTGT CGGCATCCTG CAACCACAGA ATGAAGTCAT GCATTATCCC
AATAAGATAA CAGACCGTGA CTTTGACGGA TGGATACAGG AAAGAGGTCT TTACTTTACG
CAGATGGCGG ATGCTTCTTA CCAGAAGCTC TTCGCGATGC ATGATAAAGG AGAAGAAGAC
CTGCAGGGTT CTACCCTGGT AGCGAATTAC GGTAAAGGCA GATATGTGTA CACATCATTG
GCCTTCTTCC GTGAACTGCC AGCTGGTGTA CCAGGCGCCT ATCGCTTATT TGTGAATCTT
ATTTCAAAGA AGAAATAA
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| Protein sequence | MVKGFCLTLI SGLVAVTAWA QRSPLINAAD IKLQLKKLDT LGSVLYIAAH PDDENTRLLG
YLAKDKLYRT GYLSLTRGDG GQNLVGDEQG ELLGLIRTQE LLAARRIDGA EQFFTRALDF
GFSKNPAETF TIWDKEKILG DVVWMIRKFQ PDVIVCRFPP DSRAGHGHHT ASAMLAEEAF
EAAADPKRYP EQLKQLKPWK AHRIMWNSFN WGGAIDNSAG LLYELNVGTF NYLLGRGYGE
IAAESRSQHK SQGFGVAATR GSSYEYFAPV KGDKPVYSLL DGVNTTWTRI AGGKPIGEMV
DKAQANFNIE DPAASVPALL EIRKAIQALP EGYWRTQKLK ETEDLLLACA GLWMEAYSNA
QVVVPGQPMQ GSVQLLCNSN ANVMVDQITF GGKDTVFNKL PLEFNRLRTI NESMTLPAGL
AESQPYWLQD PHPIGIYTIK DPMMVGYPEN KPALEAVIKL RINGEQLTVT RPVQYKFTDP
VKGELYEPLV VAPPVVATLN NSVFIFTQTQ SQPVQVKLRA MGLPNKGTIR LQLPAGFTSQ
EAEQSYELSS KGDETAVTFH IAPQKVAGIN RTDTLRVEIR SEGKVYTQSI RTIAYDHIPD
INIFPEAIAR LVTVDLQRNG RKLGYISGAG DMVAASLRQV GYEVTILDEK EIMNGDLQQY
DAIIAGVRVY NINPRIKYWQ PRLMEYVKNG GTYLVQYNVS SPLVTTDIGP YPFTLTRDRV
TDENAAVGIL QPQNEVMHYP NKITDRDFDG WIQERGLYFT QMADASYQKL FAMHDKGEED
LQGSTLVANY GKGRYVYTSL AFFRELPAGV PGAYRLFVNL ISKKK
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