| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5435 |
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| Symbol | |
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| ID | 8361612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6945934 |
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| End bp | 6948147 |
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| Gene Length | 2214 bp |
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| Protein Length | 737 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644967581 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_003125065 |
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| Protein GI | 256424412 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.72924 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.609194 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATG CCATTATGAG TAACGCGCTG ACGGGTGTAA TACCGGCGCT GTTACTGGAT
CTGCACGGTA ACCTCTTGTA TGCCAATCAG CAGGCGTCGG GGTGGCTGCA GATACCGGAG
GGGGAATTTC ATCCGGCAGG AAATATTACA AGTGTACATT TTAATGATGT CATCGGAAGG
AATGCAGGGG TGTACTGGCC TATGCTTTGT CACCTGCTCA ATATGGGCCG TCCGGCCTGT
GTGGAGATGT ATTGCCATAC GCGTCAGTGG GTACAATGGA AGTTAAGTCC GGCAGGAGAC
CATTTCCTCC TGTCAGGTAC TGATATTACC GGAAGACGTC CGGCCGAACC GGCATCGGTA
TTAAACGCCT TGCCTTTCGG CTTGCAGCAC TTTGCACCTG ACGGTACCCA TCGTGGCGCC
AACGAATTGC AGCAGCAGAT ATGGGAAGGC ATCGACCCCG TACTCTGTAT GCCAGGTTAT
AACCTTTTTG AAGAACCGGT CTTCCAGGAA ACTGGCCTCT GCGACCTTTT TACCGCTGTA
CAATGTAATT GCGAGCCTGC TACCGGAGAA ATACTGCTTG GTTACCGGGA ACAGGCCATC
AACGGCGTAA TCCGTATCCT ACCCGCTTAT TACGAAGCAA CCGTATTTGC CGTCAGCGAC
CACCAGGGGA GTATTATCGA ACTGGTAATG ATCATGAGCG ACATTACCGA AAAGCAGCTC
TCCCGGATGC AACTCCAGAA AAGTGCCCGC CTGCTGGACC TGATCATTGA ACACCTGCCC
ATCGGCTATA TTCAGTTTGA CCACTTCGGG TTTATCCGCC GTATCAATCA GACGCAGCGG
GAATTCTTCC AGTATGAGTA CGAGGAAGGA GAAACCCCTT TTAATATCAT GAACGATCCG
TTCGCCCGGC TCTACGGACT GGACGAGTTG TTCATACACG TCATGGTGCA CAATAAGATG
CTCCGCGTCG AAAAGCAACT GGACTTCTCG AAAGACAGTC GCTGGACCGC CCAGAATAAA
GAAGTCTGGC TGGATCTTAC CCTATTCCCC CTACGGGATC CCGTCGACCA GGAACAGATT
GTTGTCGTCC TGGTAAATGA TATCACCGAC AGGAAACTGG AGCGCCAGAT GCGCAACCTG
CTGCAGCGCA ATACAGAACA ATTACACCTG TTTTTCGACG CCGTAGATAT GGGATATGCC
ACTATGGAAA GGGACGGCAC ATTGTCTTTT GTCAACACCA AGGCGGAAGA AATGGCCGGT
CGACAGGTAT TCCCCGGAGA GAACCTGTTT AGCGTCCTCC CTGAACTTGG ACACCTCAGT
CCGTTCAGAA CCCGTTTCTC CGCGGCCCTG ACTGGCACCG TTTCACAGTC TTTCAGCAGT
TATTTTCCCC GCCGCTATAA ATGGTACGAG TTCCTGATTA CCCACATGAG CGACGGGACC
GTTTCCGTCT TTATCCGGGA TATCAGCGAC AGCCGTAATA TGCAGAAGGA CCTTTTCCGG
GCCAATAAGC AGCTAAGTAA GCTGAACCGG AGTCTGGTCA ACCAGAATCA GCAACTGGAA
GATTTCGCAC ATATTACCTC GCACAACCTG CGGGCGCCCA TCGCAAACCT GAAAGCACTG
ATGCAGATGC ATAATGATTC AGTGTTGCAA CATGAAAAGG AACAGTACCT GGGATTGCTA
CAGGAAGTGA TCTTAAAGAT AGACGAAACG CTCAATGATC TGGTGGACGT TGTCCAGATC
AGGAAAGATG TGGATATGGA ACGGGAAGAG CTTATATTTG CCGAACGTCT TCAACATGTG
AAAGACGTTT TGTTTGCGGA TATTGAAAAG AGCGGTATAC AACTCACGAC TAATTTTGAA
CATGCGCCTT CGCTGGAATT CCCGCGCCTG TACCTGGACA GTATCCTGCA AAACCTGATC
ACCAATGCCA TCCGTTATCG TACCCTTGAA CATAGGCCCC GTCTGCACCT GAGAAGCTGG
CGTGAAAACG GTCATACTAT GCTGACCGCA GAAGATAATG GACTGGGTAT CGATATGGAA
CGTTTCGGAC ATAAGCTGTT TGGTTTCAGA AAGACGTTTC ATAAGAATAA AGACGCGAAA
GGTATCGGCC TTTTTATCAC CAAAACACAG GTTGAGGCAA TGGGTGGGAG CATTCGTGCG
GAAAGTACAC CAGGCCGGGG AACGAAATTT ATTATTACCT TTAAAACAGA ATAA
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| Protein sequence | MMNAIMSNAL TGVIPALLLD LHGNLLYANQ QASGWLQIPE GEFHPAGNIT SVHFNDVIGR
NAGVYWPMLC HLLNMGRPAC VEMYCHTRQW VQWKLSPAGD HFLLSGTDIT GRRPAEPASV
LNALPFGLQH FAPDGTHRGA NELQQQIWEG IDPVLCMPGY NLFEEPVFQE TGLCDLFTAV
QCNCEPATGE ILLGYREQAI NGVIRILPAY YEATVFAVSD HQGSIIELVM IMSDITEKQL
SRMQLQKSAR LLDLIIEHLP IGYIQFDHFG FIRRINQTQR EFFQYEYEEG ETPFNIMNDP
FARLYGLDEL FIHVMVHNKM LRVEKQLDFS KDSRWTAQNK EVWLDLTLFP LRDPVDQEQI
VVVLVNDITD RKLERQMRNL LQRNTEQLHL FFDAVDMGYA TMERDGTLSF VNTKAEEMAG
RQVFPGENLF SVLPELGHLS PFRTRFSAAL TGTVSQSFSS YFPRRYKWYE FLITHMSDGT
VSVFIRDISD SRNMQKDLFR ANKQLSKLNR SLVNQNQQLE DFAHITSHNL RAPIANLKAL
MQMHNDSVLQ HEKEQYLGLL QEVILKIDET LNDLVDVVQI RKDVDMEREE LIFAERLQHV
KDVLFADIEK SGIQLTTNFE HAPSLEFPRL YLDSILQNLI TNAIRYRTLE HRPRLHLRSW
RENGHTMLTA EDNGLGIDME RFGHKLFGFR KTFHKNKDAK GIGLFITKTQ VEAMGGSIRA
ESTPGRGTKF IITFKTE
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