Gene Cpin_5422 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5422 
Symbol 
ID8361599 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand+ 
Start bp6932322 
End bp6932918 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content42% 
IMG OID644967568 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003125052 
Protein GI256424399 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.650952 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.302282 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACCAA AGAACCTCGA AAAAGAAGAA GCGATCCGTT CCATAGCGTT ACAGATTATA 
GCAGAGGAAG GGCTGGAAAA TCTGAGTATG CAAAAGCTGG CGAAAGCGGC GAATGTATCT 
CCGCGTACCA TTTACATCAA GTATGAGAAT AAAGAGGATT TTCTTATCAA ACTGTTTATT 
GATGAAGTGA TCGGGTCTTA TGAAAAAGCC GTGCTGGAAA AGTTTGATCC CGAAATGCCT 
TTCGCGGAAG GTGTAAAAAA ACTGTGGGCC AACGGCTTCC GCTACTTTAA AGAAAACAGG 
CACTATTATG CACTGATGCA GTATGGAAAA TCCTCTCCCC TGCTGAATAA AGCTTACCAG 
GAAAGAGGTA TCAGGGAAGG CGATTTCTTT GCCCCTATTC ACACCTTCTT CTCCTTTCAT 
GTGAAGGCAG GCACGATTAT AAAATTGCCC ATGGAAGCAC TCAGGGCAAT CCTGTTTGCA 
CCACTCTTAG ATCTCATTAA TGAATACTTC GAACATACAC AGCGGCCTAA ACAAATCATC 
ACTGATAAAG TATTAGCAGA TTGCTGCGAA GCAGTGATAA AAGGTTTGCT GAAATAA
 
Protein sequence
MRPKNLEKEE AIRSIALQII AEEGLENLSM QKLAKAANVS PRTIYIKYEN KEDFLIKLFI 
DEVIGSYEKA VLEKFDPEMP FAEGVKKLWA NGFRYFKENR HYYALMQYGK SSPLLNKAYQ 
ERGIREGDFF APIHTFFSFH VKAGTIIKLP MEALRAILFA PLLDLINEYF EHTQRPKQII 
TDKVLADCCE AVIKGLLK