| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5273 |
|---|
| Symbol | |
|---|
| ID | 8361450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 6678556 |
|---|
| End bp | 6679524 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644967421 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003124905 |
|---|
| Protein GI | 256424252 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03519] Bacteroidetes-specific putative membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000139147 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.102523 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TATTTTTGAT AGCTGGACTG CTGACATCAT TGGGATTGAC TGTGCACGCA
CAGCAGGATG CACAGTATAG CCAGTACATG TTCAATGGCA TTTATATTAA TCCTGCCTAT
GCAGGATATA AGGAGCAGTT GAACCTGCAT GCTTTTTACC GTAACCAGTG GACTGGGCTG
AAAGGCGCGC CGGAGAGTTT CTCTCTGGCC GTGGATGCGG TCGCCAACGA CGGTAACGTC
GGACTGGCAT TGCAGGTCTC CGGTGATAAA CTGGGTGCGC AGGATAACCT TTCTGCTTAT
GTCAGCTATG CTTACCGCAT CCGCCTGAAC AGGGAAGGTT CTTCCCGGCT GGCACTGGGG
CTGAGCGTGG GTATGCTGCA AACGGGTATT GACGGTTCCG TATTGAATCC GAATGATCCG
GAGACAGATA TGCCGGCGGG TCTTCACCGC CTGACGCCGG ACGCCAGAGC GGGGATCTTT
TATTCGGATG ACCGTTATTA TGCCGGTTTC TCGGTAGATA ATATCGTTGT ACAGGCATTT
GATAATAAAG GCAGGTTCCT GTATCTGCCA CAGACTAAGC TGCATTACTA TCTGACCGCT
GGTACGCTGA TTCCTTTGAA TGAGGATATT CAGCTAAAGC CTTCCTTTCT CCTGAAAGAT
GACAGAGGCG GTCCTACCAG TCTGGACCTG AACGCCTTCC TGCTCCTGAA AGAGGTGGTA
TGGATCGGTG GTTCCTATCG GACGGGCCTG AAGGTGTATG ATAAAAGCTA TCTGCAGAAA
AACCTGATGT ATCGTAACGC GGCAGTGGCA GCAGTAGAGG TATTCCCTGT ACCGAATCTG
CGTATCGGAT ATGCCTACGA CTTTTCTGTA GGTCCTTTAC AGAACTACAG CGGCGGCACT
CATGAGATCT CTGTAGGGTT CACCTTTAAC AAACAAAATA TCAGGATGGC TACGCCAAGG
GTATTCTGA
|
|---|
| Protein sequence | MKKIFLIAGL LTSLGLTVHA QQDAQYSQYM FNGIYINPAY AGYKEQLNLH AFYRNQWTGL
KGAPESFSLA VDAVANDGNV GLALQVSGDK LGAQDNLSAY VSYAYRIRLN REGSSRLALG
LSVGMLQTGI DGSVLNPNDP ETDMPAGLHR LTPDARAGIF YSDDRYYAGF SVDNIVVQAF
DNKGRFLYLP QTKLHYYLTA GTLIPLNEDI QLKPSFLLKD DRGGPTSLDL NAFLLLKEVV
WIGGSYRTGL KVYDKSYLQK NLMYRNAAVA AVEVFPVPNL RIGYAYDFSV GPLQNYSGGT
HEISVGFTFN KQNIRMATPR VF
|
|---|
| |