Gene Cpin_5264 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5264 
Symbol 
ID8361441 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6668107 
End bp6668499 
Gene Length393 bp 
Protein Length130 aa 
Translation table11 
GC content44% 
IMG OID644967412 
Producttranscriptional regulator, HxlR family 
Protein accessionYP_003124896 
Protein GI256424243 
COG category[K] Transcription 
COG ID[COG1733] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.000676248 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCAAAGA AAAATATAGA GGGCACTATC TGTGCAGTCG ATTTCGCATT CAGGAGAATT 
GGTGGTAAGT ACAAAGGGCG GATCCTCTGG TACCTGCATC AGTATGGCGT ATTACGTTAC
GGCGAATTGC GGCGCAGTAT AAAGGATATT ACCACTAAAA TGCTGACACA GACCCTGCGT
GAACTGGAAG AAGACGGACT GGTACACCGG GAAGTATTTC AGTCAATGCC TCCCCGTGTA
GAGTATTCAC TGACAGATTC CAGTAAACAA CTGATACCTT TTATCGATCA TTTACGGCAA
TGGGGAGATA AACAGATGGC AAAAGAAAAT ATCCCCGTCA TCAAGAGTAG TTTATCTTGT
ATAATCACGG AGGAAGAACA GGCCGAAAAA TAA
 
Protein sequence
MAKKNIEGTI CAVDFAFRRI GGKYKGRILW YLHQYGVLRY GELRRSIKDI TTKMLTQTLR 
ELEEDGLVHR EVFQSMPPRV EYSLTDSSKQ LIPFIDHLRQ WGDKQMAKEN IPVIKSSLSC
IITEEEQAEK