| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5194 |
|---|
| Symbol | |
|---|
| ID | 8361371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 6558352 |
|---|
| End bp | 6560001 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644967342 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003124826 |
|---|
| Protein GI | 256424173 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4615] ABC-type siderophore export system, fused ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR01194] cyclic peptide transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.202589 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0685542 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGATC TGTTAAAAGT ATTCCGTACA AAGTCCAGAC TATTTTATCT TTTTTTGATA
ACGCTTGGGC TGATTGGCAG TTTTACGAAT ATGGGCATAC TGATGCTTAT CAATGAGGCA
TTCAGTGGAA AAGCCACATT TCTGACATCG TCAGGAATTC CGGGTTACGC GGTATTCGTT
TTTTTAATTC TGGTTTCATT TGTATCTACT GCTGTTTTTC AGAATTATAT GGTAGCGCTC
ACTAATAGTG TGATGTTCTC CCTGGAACTG TCAGTCATAA AAAAAGTACG CACCGCATCC
TATGAATCTT TTGAAAAAAT GGGCGCGGAA AAAATATATG CAGCCATTGG TGATACGCGT
ATTCTGAGCA GAGTACCGGA AATATTTGTT ACCCTTATCA ACTCGCTTGT TACAATCGTA
TGTTCTTTTC TTTACTTTTT CTGGATATCA CCATTGGCCT GCCTGGTTGT GCTGCTGTTA
ATGAGTGTAT TACTGGTTGT TTATCTGTAC AGGAATGGCA AAATAGAAAA AGACCTTAAT
AAGGTCAGGG ATCTTCAGGA TGTGTATTAT TTTTCACTTC GTGAATTATT GGGAGGGTTC
AGACAGATCA GAATATCGTG GCTGAGGAAT AATAATATTT ATAACAGGCA TATTCTCCAT
AACAGGAATA AGTCCAAAGA CCTGAGTACG CAGGTATCGA AGAAATATGT TTCCAATGAG
CTTACAGGAG TGTATAGCTG GTATCTGGTT CTGGGCCTTG TCATTTATCT GATACCGGCG
ATCTTTAAAA CCAATAGTGG CGAGCTGGCG GCATTTATAA CAACTGTATT ATTTATGATG
TCTCCTGTAT CCCGGCTTAT CATGGTCATT CCATTTTATG CCACTTTGAG GATCGCCGTG
GAGCGCATCG GAAAAATAGA TGAACAGCTT GAGGTAGACG CACTTCCTGA TCCGACTGCG
GGAAATTTCA CCCGCGAATT CAATACGCTC AGATTTGAAG ATATCCATTA CAGATATATG
GCAGAAGATA GTAGCTCTTT CACCCTGGAG CTGGAGGATT TCACTGTCTC AAAAGGAGAA
ATCATATTTA TTGTTGGTGG CAATGGTTGT GGTAAAACCA CCTTTATCAA TCTGCTGACC
GCCTTGTGCA GAGCGCAGGG AGGTAAGGTG TTTATAGATG AAGAGGAAGT GGACTGGTTG
ACATATGCTG CATTCAGTAA TAATATGGCT GTTGTATATA CCAATCAGGT ATTGTTTCAG
GAGAATTATG ATGATCATGA TATGTCAGCT AGCAATCGTA GGTTACTGGA GTTAGAGCAT
ATGTTGAATC TGAAGGGTAT TTTGAAGATC AATGTTGAAG AAAATCGCGC CGATGTTAAT
CTCTCAAGAG GACAACAGAA AAGATTGGCG TTATTATTAG CATTGCTGGA GGATAAACCG
ATTGTTGTGC TTGATGAGTG GGCGGCTGAG CAGGACCCCC GGAATAAGAA ATTGTTTTAT
ACAGAATGGC TGCAGGAGAT GAAACGAATC GGAAAGACGG TGATCGCCGT GACGCATGAT
GAAGACTTTT TTCATGTAGC AGATCGTGTG GTGAGATTTG AATATGGAAA AATCATTGCG
GATACCTGTA TTACAAGAGA ACCCGCATAA
|
|---|
| Protein sequence | MIDLLKVFRT KSRLFYLFLI TLGLIGSFTN MGILMLINEA FSGKATFLTS SGIPGYAVFV
FLILVSFVST AVFQNYMVAL TNSVMFSLEL SVIKKVRTAS YESFEKMGAE KIYAAIGDTR
ILSRVPEIFV TLINSLVTIV CSFLYFFWIS PLACLVVLLL MSVLLVVYLY RNGKIEKDLN
KVRDLQDVYY FSLRELLGGF RQIRISWLRN NNIYNRHILH NRNKSKDLST QVSKKYVSNE
LTGVYSWYLV LGLVIYLIPA IFKTNSGELA AFITTVLFMM SPVSRLIMVI PFYATLRIAV
ERIGKIDEQL EVDALPDPTA GNFTREFNTL RFEDIHYRYM AEDSSSFTLE LEDFTVSKGE
IIFIVGGNGC GKTTFINLLT ALCRAQGGKV FIDEEEVDWL TYAAFSNNMA VVYTNQVLFQ
ENYDDHDMSA SNRRLLELEH MLNLKGILKI NVEENRADVN LSRGQQKRLA LLLALLEDKP
IVVLDEWAAE QDPRNKKLFY TEWLQEMKRI GKTVIAVTHD EDFFHVADRV VRFEYGKIIA
DTCITREPA
|
|---|
| |