Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5117 |
Symbol | |
ID | 8361293 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 6388702 |
End bp | 6392100 |
Gene Length | 3399 bp |
Protein Length | 1132 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644967265 |
Product | Carbohydrate binding family 6 |
Protein accession | YP_003124750 |
Protein GI | 256424097 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2133] Glucose/sorbosone dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.17685 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAA ACCTGCTGCT AACATTTCAT AAGCGGTTCT TTACGGCCTG CTTTGGAATC GCCCTGCTCG CAGCGAGCAC AGACCGTGCC TACAGCCAGG TGCCTACTGG CTTTACGCTG AAAAAACTAA CCGACAATTC CATCGTTGAA GCTACTGCAA TGGCACATTC TGCTGATGGC AGAATATTCA TGGCTGAACG TGGAGGTAAG GTGAAAGTTT ATCAGAATGG AACCGTATCT ACCGTGTATA CCGCTCAAAC AGTAACCGAT GCAGAACAAG GTTTACTGGG TATCACACTT CACCCTCAAT TCACCAGTAA TGGTCGTTGT TACATTTTCT ACACCAATAG GGAAATGACA CGTCATTACC TGGACATCTT GTTTATCAAC CAGGCTAACG GTGTCGACTC TGTCAGAAGA GTAATGGAAT TTGATCAGAT CATCAACGGC GCGCACAATG GTGGCGCGTT GTTATTCCGC AGAAACCTGC TGTATGTAGC GATCGGCGAG AGCAATGAAG CGATCGAATC TCCGAAGCTG ACGACTTACC GTGGTAAGAT CCTTCGTCTG ACAGAAGACG GACAACCAGC TCCGGGCAAT CCTTATTATG ACACCCCTAA CGCCACCCGT CAGCAGAGAA GTATCTGGGC ACGCGGTATG AGAAATCCGT GGAGGATGTC TCTGGACCCG GTGTCTCAAA GAATCTTTGT GGTGGATGTA GGCGGTGACT ATGAAGAAAT TAACGATGTT ACCAATCCTG ATCCTGCCAG AGGATATAAC TATGGCTGGG ACCAGAATCA CAAAACAGGT TATCAGCCGG ATACCACTAC GACGATCCCT CCGGTTTATT TTTATGACCA CAGTGAAGAT AAAGGCGGAT GTGCTATCAC ATCAGGTGTG TTCTTCAATC CTCCTGCTAC CAACTATCCG CCACAGTATC TGAATAAGTT CTTCTTCTCA GACTGGTGTC GTGACTGGTA CAGGTTTGTG GACATCAATG GTCTGAAGCC TTCTTCTCAG TTTACCGAGT TCTCAGCGAA GAACTTCACC AGGATCCTGG GTACCAGCGT TGGTATAGAT GGTAACATTT ATTACATCTC TTATGCGGGA GATGGTAGTC TGTATAGAAT TGAATACAAT AACAACCAGG CGCCATCTAT CGTCAATCAA CCTGAAAATA AAACCGTTAC AGCGGGAGAC GCGGTGTCTT TCTCCGTTAC TGCTTCCGGT GGTACGCCAT TATCTTTCCA GTGGCAGAAA AACGGCGTTA ACATTGCCGG CGCTACTGCT GCTACCTACA GCATTGCACA GACCACACAG GCTGACTCAG GTCAGTACCG TTGTGTAGTG ACCAATCCGA TCAGCACCAT CAACAGTAAT TCTGCGAAGC TGACCGTATT GCCATTCAAT GCAAGACCAG TTCCGAAGAT CCTTACACCG GCAGCTACCC TGACCTGGAA CGTAGGTACC ATCGTTAACT ATTCTGCAAC AGCTACCGAT GCTGAAGACG GTACCTTACC TGATTCCGCT TACACATGGG AGGCACGTTT CTATCATAAA GACACCCCTA CCAGTGAGCA CTGGCATCCT GGTCCGACCC TGACGAAAGG CGTAAAAACA GGCAGCTTCA CTGCTGACAA CCTTGGTGAG TCTTCTCCGA ATATCTGGTT CAGACTGATG CTGACTGTAA AAGATTCTAA CGGCCGTACC GGCGTAGACT CCGTTGACGT TTATCCAAAC AAAGTACAGG TTACTGCTGC CAGCAATATT CCTGGTATCA GTCTGGTACT GGGTTCAAAA GAGGTAACAC CGTTCACCAA AACAATGGTG GTAAACTCCC TGACTACACT GCAGGCAGTT ACCCCACAGT TGCTCGGCGA CACGACCTAC GATTTCGTGT CATGGGCACA TGGCGGCGAT GCATTACAGT CCATCCGTGT ACCAGCAAAA GATACCGTTT TCCGTGCTAC CTATAAAGCA GGTGCTTCCC GTCAGAATCC ATACCCTGAC CCGGCCGTAC CTTCCACTAT CCCAGGTAAA ATCGAGATCG AAAACTTCGA CTATGGTGGC GAAGGCATTG CCTACCATGA CGAAAGCGCT GCCAATCAGG GTAATCAATA CCGTACCACT GAAGGCGTAG ACCTCGAAAA CTGCGCTGAA GGTGGTTTCA ATATCGGTTA TGTCAACAAC GGTGAATGGC TGGAATATAC GGCCAACGTA ACCGTTACCG GTAAATATAC CTTCTCGGCC CGCATCGCTA ATCCGGGTAC TGCCAAGACC CTCCACGTAG AAATGGATGG CGTTAACATC ACCGGCACCG TAACAGTACC AACAACCGGT GGTTTCCAGG CATGGCAGAC CGTTTCAACT ACTACCACAC AGTCACTGCC TGCCGGCATA CATGTGTTCC GTATTGTACT GGAAGCAAAT GACTTCAACG TTAACTACTT CACTTTCGAT CTGGCAATCG GTAACGCACC AACCGTGAAC ATCACCGCTC CTGTGAATGG CGAAACCTTT GTCACCAATT CCGATATCCT CCTGAAAGCA AATGCTGCAG ATTCAGACGG ATCTATCAGA AAAGTGGAAT TCTTCCAGGG TGCTACTAAA ATCGGAGAAG ATACAACTGC TCCTTACCAG TTCCTCTGGA CAGGCGTTGC CACCGGCGCT TACAGCATCA CTGCAAAAGC AACCGACAAC ACACAGATGA CAGCTACCTC CACTCCTGTC GCCATCAACG TAACCGCTGC CGCTGTTGAA AAAACAGTAC CAGGACATAT CGAAGCAGAA AGCTTTGATG CCATGTCCGG CATCCAGACA GAAGGTTGCG GAGATACCGG CGGTGGTGAA AACATCGGCT GGGTAGATAC CGGCGACTGG ATGGATTATT TCGTTAACGT TACCGCAGCA GGTAGCTATA ACGCATCCTT CCGCGTAGCC AGCGCACCAG GTGGTGGTCA GCTGCAGCTG CAGGCAGGCG CTAATATCCT GACTACTGTT GACGTACCAG CTACCGGCGG ATGGCAGGCA TGGACTACTA TCACTAAAAC AGTCTCCCTG ACAGCAGGTA AACAGACATT ACGTGTATAT GCGTCACATG CAGACTTCAA CCTGAACTGG ATTGAATTCG CTGCTACGAC ACAAGCGGCA AGAACATCAG CCGTAGTAGA ACAGAAACCT TCTATCAGAA TGTATCCAAA CCCGGTTGTG AATCTGCTGA CAGTAGGTAA CGTGAAAGGC GATGGTCTGT TCACTATTAC CAATGTCGCT ACCTCACAGA CGATCATCAT CAAGGCGACC AATGGTATAC TTGACGTAAG CAACCTGACA CCAGGTGTTT ATGTACTTAA ATTCACCAAT AATGGAAAAC CTGTAACGAA GAAATTCGTG AAGATGTAG
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Protein sequence | MKKNLLLTFH KRFFTACFGI ALLAASTDRA YSQVPTGFTL KKLTDNSIVE ATAMAHSADG RIFMAERGGK VKVYQNGTVS TVYTAQTVTD AEQGLLGITL HPQFTSNGRC YIFYTNREMT RHYLDILFIN QANGVDSVRR VMEFDQIING AHNGGALLFR RNLLYVAIGE SNEAIESPKL TTYRGKILRL TEDGQPAPGN PYYDTPNATR QQRSIWARGM RNPWRMSLDP VSQRIFVVDV GGDYEEINDV TNPDPARGYN YGWDQNHKTG YQPDTTTTIP PVYFYDHSED KGGCAITSGV FFNPPATNYP PQYLNKFFFS DWCRDWYRFV DINGLKPSSQ FTEFSAKNFT RILGTSVGID GNIYYISYAG DGSLYRIEYN NNQAPSIVNQ PENKTVTAGD AVSFSVTASG GTPLSFQWQK NGVNIAGATA ATYSIAQTTQ ADSGQYRCVV TNPISTINSN SAKLTVLPFN ARPVPKILTP AATLTWNVGT IVNYSATATD AEDGTLPDSA YTWEARFYHK DTPTSEHWHP GPTLTKGVKT GSFTADNLGE SSPNIWFRLM LTVKDSNGRT GVDSVDVYPN KVQVTAASNI PGISLVLGSK EVTPFTKTMV VNSLTTLQAV TPQLLGDTTY DFVSWAHGGD ALQSIRVPAK DTVFRATYKA GASRQNPYPD PAVPSTIPGK IEIENFDYGG EGIAYHDESA ANQGNQYRTT EGVDLENCAE GGFNIGYVNN GEWLEYTANV TVTGKYTFSA RIANPGTAKT LHVEMDGVNI TGTVTVPTTG GFQAWQTVST TTTQSLPAGI HVFRIVLEAN DFNVNYFTFD LAIGNAPTVN ITAPVNGETF VTNSDILLKA NAADSDGSIR KVEFFQGATK IGEDTTAPYQ FLWTGVATGA YSITAKATDN TQMTATSTPV AINVTAAAVE KTVPGHIEAE SFDAMSGIQT EGCGDTGGGE NIGWVDTGDW MDYFVNVTAA GSYNASFRVA SAPGGGQLQL QAGANILTTV DVPATGGWQA WTTITKTVSL TAGKQTLRVY ASHADFNLNW IEFAATTQAA RTSAVVEQKP SIRMYPNPVV NLLTVGNVKG DGLFTITNVA TSQTIIIKAT NGILDVSNLT PGVYVLKFTN NGKPVTKKFV KM
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