Gene Cpin_5096 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5096 
Symbol 
ID8361272 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand- 
Start bp6357742 
End bp6358335 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content46% 
IMG OID644967244 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003124729 
Protein GI256424076 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.841888 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.375957 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGT CAGAAAGAAC GAGGCAGTTG ATAATAGAAC AGGCTGCGGA CATATTCAAC 
GAAAAAGGCG TTGCAGGTAC TTCTATTGAT GAAGTGCTGC AAGCGGCTAA AGTGGCCAAA 
GGCTGTCTCT ATGGACATTT TCAGAGTAAA GATGAACTGG CCCTCGCCAG CGCGGCATAC 
CTGCTCGATA AGGTGGCTGC CCGCCGGATG AATATATTAC AACAGCATAA AACATCCATA 
GACAAGCTAC TGGCTTATGC TGAGATGAAT GCCAATCCGC TGGATAACTC TTTTGTACAC 
GGTGGCTGTC CCATTCTTAA CTTTGGAGTG GACACAGATG ATACCAATCA GGCCATCCGC 
GAAAAGGTAC ATTCAGTGAT CAAAGCGGCT AACAGGAATC TGGTCACTAT TATCAAAGAG 
GGTATTACAG CGGGGGAGTT ATCTCCGGAG ATCAATCCGG AAGAATTCGC TATCAAGCTC 
TTTGCTACGA TGGAGGGCGC TTTCCTGATG TCCCGGGTGA TGGGATCACC GCTACCCATG 
AAGACCGCAA TCAGGGCAAT GAAGAAAGAA ATTATAGCAT ATAGTCTTAT TTAA
 
Protein sequence
MKKSERTRQL IIEQAADIFN EKGVAGTSID EVLQAAKVAK GCLYGHFQSK DELALASAAY 
LLDKVAARRM NILQQHKTSI DKLLAYAEMN ANPLDNSFVH GGCPILNFGV DTDDTNQAIR 
EKVHSVIKAA NRNLVTIIKE GITAGELSPE INPEEFAIKL FATMEGAFLM SRVMGSPLPM 
KTAIRAMKKE IIAYSLI