Gene Cpin_5080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5080 
Symbol 
ID8361256 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6325118 
End bp6325669 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content46% 
IMG OID644967228 
Producttwin-arginine translocation pathway signal 
Protein accessionYP_003124713 
Protein GI256424060 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.96578 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.478678 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTATAA ACAGACGAAC CGCATTAAAA CAGGTCCTGG TCGTCTCCGC TGGTCTGGCG 
TTCCTGCCGT CCTGTGTACG GAAAACGACT CCAGCTTCTA TTTCATTAAA GAATATAGCG
GTAGATGGTG AGGGCGAGAA TATGCTGGCA TTGCTGGCAG ACACATTAAT TCCCACTACT
TCGACACCTG GTGCGAAGGA CGTCAAGGCG CACTTGTTTG CACTGACGAT GGTGGATGAT
TGCTTTAATA AGGAAGACCA GCAGAAATGG ACAGCTGGTA TGAAGGCATT TGCTGAACTG
AGTGACAAAA AGAATGGTAA ATCATTCGAG AAAAGCACTC CCGAAGCAAG GACGGCCCTT
TTGGAACAAC TCGATAAATC CAAAGCAGAA GAAGGGGGCG CTGCTTATTT CTATCACGCT
ACCAAAAATC TGATCATCAG AGGTTATACC AATTCAGAAT TTTATCTTAC TAAAGTGCAG
GTATACGAGC TGGTTCCCGG CCGTTTTCAT GGAAGCGTAC CTGTAAAACC AGTCGGCAGA
AGAACTGCTT AA
 
Protein sequence
MLINRRTALK QVLVVSAGLA FLPSCVRKTT PASISLKNIA VDGEGENMLA LLADTLIPTT 
STPGAKDVKA HLFALTMVDD CFNKEDQQKW TAGMKAFAEL SDKKNGKSFE KSTPEARTAL
LEQLDKSKAE EGGAAYFYHA TKNLIIRGYT NSEFYLTKVQ VYELVPGRFH GSVPVKPVGR
RTA