| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5002 |
|---|
| Symbol | |
|---|
| ID | 8361178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 6253983 |
|---|
| End bp | 6255314 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644967151 |
|---|
| Product | peptidase S41 |
|---|
| Protein accession | YP_003124636 |
|---|
| Protein GI | 256423983 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0793] Periplasmic protease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0902927 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0318245 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCACCC GTATTACAAC CCTGCTGACA GTCATCATCC TGCACTGTTG CTGTTTTTCC
GTTTCTGCGC AACGTGCGGA TTCGCTGAAG GCAGACCTGC AACTACTGAA AACAAAACTG
CTCGCTACAC ATCCCGATAT ATATGCTTAC ATACCTGAAA ATAAATGGGC AGATTTATTC
GACAGCTGTT ACCAGCAGAT CAATGATGAT ACAGACGAAC GGCAGTTCTA TGGTATCGTG
AAAATATTGC TGAGTGCTGT AGGTGACGGA CACCTGTCCA GCGGCGCACC CGCCCCGTTC
GCACAATTCA TTCATACAGA AAATAGTTAT CTGCCCCTGC TGACCTACAT TACGGAAGAC
AGCATTTTCA TCACCAGCAG TGTAGACAAT ACCATTCCGG CAGGTAGTCA GCTGATCAGT
GTCAACTCAC ATCCTGCGAA TGTCATGCTG GAAAAAATGC GGGGATACCT GATGGCTGAC
GGTTATAACA CGACAAAGAG AAATCTTGTA CTGAACCAGA TCTTTTACTT TTACTATTAC
CTCGCTTACG GCTATTCCGG GGGCTTCACG GTAACATATA CAGCACCCTC CGGACAAACA
AAAACAGTCT CTCTGACGGC CGCAAAAGAA ACCGCCATCA ATGCATTAAA AACACCGTCC
ACCACGACGA CGCTATTGTC TTTTTTCATC ACAAATGCTA AAACCGGCAT CTTAACTATT
AAGACTTTCG GTTATAGTGA TCTGCAGGAA GCTAAACTGG ACTACCCCGC TTTTCTCGAA
CAATCATTCC GGCAGTTAAA GAAAGCAGGT GTTAAAAAAC TGATCATTGA CCTGCGGGAT
AATGGTGGCG GCAGGGATGC CTATGGCGTA CTGCTGTACA GCTATCTTTC CAGGCAACCA
TTCCACTACT ACCGCTACCT GGAAAAAGAT AAAAAGAAAC TCAGCGGCAA ACCAGGACTG
GGCTTACAAC ATCCCGTCGT GCTACACTAT GATTATCAGG TCGCAGTATT GATCAACGGA
CAAACCTTTT CTGCTGCTGC AGAATTTTGC GCCGTTGCAT ATAGCAATGA CAGAGCGATT
TTCTTCGGAG AAGAAACCGG TGGCGCTTAT GAAGGCAATC ACTCCGGACA ACTGATAGAA
ACAGTGCTTC CATTCAGTAA AGTCAGCATA TGGATTCCCA CCGTCAAATA TGCCATGGAT
GTGCGTCCGC CGAAACACGC CGGCCATGGT ATCATTCCTC ATAAACCGAT ACAAATGACT
GTTGACGCAT ACATGCAGCA AGATGACAAA GTGATGGAAG CAGCATTACA ATGGACACAA
GCACTTAAAT AG
|
|---|
| Protein sequence | MFTRITTLLT VIILHCCCFS VSAQRADSLK ADLQLLKTKL LATHPDIYAY IPENKWADLF
DSCYQQINDD TDERQFYGIV KILLSAVGDG HLSSGAPAPF AQFIHTENSY LPLLTYITED
SIFITSSVDN TIPAGSQLIS VNSHPANVML EKMRGYLMAD GYNTTKRNLV LNQIFYFYYY
LAYGYSGGFT VTYTAPSGQT KTVSLTAAKE TAINALKTPS TTTTLLSFFI TNAKTGILTI
KTFGYSDLQE AKLDYPAFLE QSFRQLKKAG VKKLIIDLRD NGGGRDAYGV LLYSYLSRQP
FHYYRYLEKD KKKLSGKPGL GLQHPVVLHY DYQVAVLING QTFSAAAEFC AVAYSNDRAI
FFGEETGGAY EGNHSGQLIE TVLPFSKVSI WIPTVKYAMD VRPPKHAGHG IIPHKPIQMT
VDAYMQQDDK VMEAALQWTQ ALK
|
|---|
| |