Gene Cpin_4987 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4987 
Symbol 
ID8361163 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6236163 
End bp6236540 
Gene Length378 bp 
Protein Length125 aa 
Translation table11 
GC content48% 
IMG OID644967136 
Producttranscriptional regulator, HxlR family 
Protein accessionYP_003124621 
Protein GI256423968 
COG category[K] Transcription 
COG ID[COG1733] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.432063 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGAAAAA GAAAAATCAC ATCCAGCAAT TCGCTCAATC TGCAAAAGCT GATCGGCTTC 
TGCGGAATGA TGTATGCCGT CGACATGCTG GCAGGAAGAT GGAAACTCGT CATCCTGTAT
AAACTGGAAA AGAAAACGCT TCGTTTCGGC GAACTCAAAG CCATTATCCC CGAAATCTCC
GACCGGATGC TCACCCTACA TTTACAGGAA CTGGAAAAGA ACGGCCTGGT CATCAGGACC
GCCTATGCCG AAATTCCTCC ACGGGTGGAG TACCGGCTAT CCGACAGTGC CCGGAAACTA
ACCCCTATCT GGCAACAACT GGAAGAATGG GCCATAGACC ATAAGACCCT CATGGATAAA
AATATCCCCG ATTTGTAA
 
Protein sequence
MGKRKITSSN SLNLQKLIGF CGMMYAVDML AGRWKLVILY KLEKKTLRFG ELKAIIPEIS 
DRMLTLHLQE LEKNGLVIRT AYAEIPPRVE YRLSDSARKL TPIWQQLEEW AIDHKTLMDK
NIPDL