| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4928 |
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| Symbol | |
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| ID | 8361104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6163867 |
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| End bp | 6165846 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644967077 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_003124562 |
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| Protein GI | 256423909 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0222332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.944106 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACAAA GAGATAAGGA AGTAGATCCG GTTACGTACC AGGGTGAATA TCAGGAGTGG
ATGCGCTTTG CGTTACAGTC TGCCGGGCTC GGTACCTGGG ACATGGATCC TATCAATAAG
CATGTGATTT GGGATGATCG TTGCAGAGAA CTGTACGGAT TTCCGGATGG TAATGTGACA
TCGTTTGATA ACGTAATGGC CTATATTCAT CCGGAGGATA AAGAGCTGGT GCAGAATGCT
GTCAACCGCG CCCTTTCTGA CGAACACGGA GGCCGGTACG ATACGGAATT CCGTACGATC
GGCGCTGCAG ATCATAAATT ACGCTGGTTG CGGTGTATCG GACAGGCTTA TTTCAACGAA
AATGGTGTTG CGTATCGTTT TGCCGGTACC GCTCAGGACA TCACAAAACA GCGTAAAAGC
AGGGAAAGAC AGGCGATGTT GTTTTCCCTG GTAGAAAGTA GTTCTGATTG TATGGCCGCT
TCTGACATGG ATGGCGGCCT GTTTTATATG AATGCGTCCG GCAGGAAATT GCTGGGCATT
CCCATGGACC TGGACATTGC ACAACTGGAA GAAAAAGAGC TGTATAATGT TGAAAATTAT
CAGTCTTTCT GCAATGATGT ACTCCCAGGA TTGAAAAATG GCAGAAAATG GACCGGTACT
ATTTATCTGA AGCATTATCT CACCAAAGAA ACGATTCCCT TTCACGCGGA TTATACCGTT
ATCAGAGACC CGAGAAACAA TAGTATTATT GGCCACGGGG CTTCTTTGCG TGACCTTCGT
CCGGAACTGG AAGCCAAGAA GGAGCAACAG AAATTACTTG CCTTATTGGA AAATAGCCGT
GATTTTGTGA GTCTGTCCGA TGAAAACGGA CACGTCTCTT ATGTCAATGC TGCCGGTCTG
AAACTTGTCG GACTGGATAG TTTACAGGAG GCAAAGATCC ATAACAGCAA CTACCTGATG
CCGGAAGAAC AGGAACGACT GAAAAAAGAG GTAAATGCGC AATTGTTCAA CCGGGGACAA
TGGTCGGGTG AAATATCTTA TCGTCATTTC AAAACAGGAG AAATCATACC GGTACAGGCG
ACTACCATGC TTGTATACGA TCCGGTAACG GGGGTTTCTC AGGGAAGGGC CAGTATTGCA
CGTGATCTGC GGGAAGAGAA GGCGTTGCGT CAGCAGATGA TCGATAATGA ACAGGAACTG
GAAAGGTTGG TGGAACTGAG AACAGATGAA CTGAAAAAGG CCAATATCGA CCTGAATATT
GTGAATCAGA ACCTGGAGCA GTTTGCGTAT GTGGCCAGCC ATGACCTGCA GGAACCGTTG
CGTAAGATCA ATATGTTCTC CGCCCTGCTA CAGGATAAAT ATGCCAATGA ACTGAATGAA
ACGGGTGTAC GTAATCTGGG CATTATCCGG AATGCGGCTA CCCGTATGAC CACATTGATT
CAGGATCTGC TGGCTTTCTC CAGGGTATCC CGTCAGGATC ATCTGTTTGA AAAAGTCGAT
CTGCGGCAGA TACTTGAGCA AGTAGTAGCC GATGTAGACG TCACAATACA GCAAAAAGGC
GCCAGGGTTG AATACGACGG ACTTTGTACG GTGAATGCCA TTCCGCTGCA CATGACACAG
TTATTCCAGA ATCTGTTAAG TAATGCCTTG AAGTTCAGTA AGGTAGATGA ACCGCCGGTG
ATCACTGTCA GTTCCCGGAT GATGGACCCT CAGGAGGTAG CGGCACATCC ACAGTTACAG
AACAGCACAA CTTATTGTGA AATAAGGGTA AAGGACAACG GCATCGGTTT CGCCCCAACG
TATGCGCGCA AAATATTTGT CATCTTCCAG CGACTGCACG GAAGAGGTGA ATATGAGGGA
AGCGGTATCG GGCTTGCGTT ATGCCAGAAA ATTGTGATCG CTCACCATGG TATTATCTAC
GCAGAATCAG CAGAAAAAGA GGGCGCTACC TTCACAGTTA TTTTACCGGC GTACACTTGA
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| Protein sequence | MEQRDKEVDP VTYQGEYQEW MRFALQSAGL GTWDMDPINK HVIWDDRCRE LYGFPDGNVT
SFDNVMAYIH PEDKELVQNA VNRALSDEHG GRYDTEFRTI GAADHKLRWL RCIGQAYFNE
NGVAYRFAGT AQDITKQRKS RERQAMLFSL VESSSDCMAA SDMDGGLFYM NASGRKLLGI
PMDLDIAQLE EKELYNVENY QSFCNDVLPG LKNGRKWTGT IYLKHYLTKE TIPFHADYTV
IRDPRNNSII GHGASLRDLR PELEAKKEQQ KLLALLENSR DFVSLSDENG HVSYVNAAGL
KLVGLDSLQE AKIHNSNYLM PEEQERLKKE VNAQLFNRGQ WSGEISYRHF KTGEIIPVQA
TTMLVYDPVT GVSQGRASIA RDLREEKALR QQMIDNEQEL ERLVELRTDE LKKANIDLNI
VNQNLEQFAY VASHDLQEPL RKINMFSALL QDKYANELNE TGVRNLGIIR NAATRMTTLI
QDLLAFSRVS RQDHLFEKVD LRQILEQVVA DVDVTIQQKG ARVEYDGLCT VNAIPLHMTQ
LFQNLLSNAL KFSKVDEPPV ITVSSRMMDP QEVAAHPQLQ NSTTYCEIRV KDNGIGFAPT
YARKIFVIFQ RLHGRGEYEG SGIGLALCQK IVIAHHGIIY AESAEKEGAT FTVILPAYT
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