Gene Cpin_4920 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4920 
Symbol 
ID8361096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand- 
Start bp6154023 
End bp6154604 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content51% 
IMG OID644967069 
Productprotein of unknown function DUF162 
Protein accessionYP_003124554 
Protein GI256423901 
COG category[S] Function unknown 
COG ID[COG1556] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0840479 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.348092 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCACGCG AAGCGATACT CGCCGCTATA AAAAAGAATC AGCCTGAATA CCAGGCATTA 
CCAGATCTGT CAGGCTTCGG CCAGGCAGGC CCGGGAGATC CTGCTGCCTT TAAGAAGGTG 
GTGGAAACGC TCGGCGGGCA GGTATATGAA ATCAACTCGT TCACAGAAAT ACAGGCACTC 
GTTGCAGCAC ATTATACTGA TCTGAAACAG GTAGTAGCTA TCAGAGAGGA ATATCTCCCT 
GGCGCTGCTA CGCAATGGCA GACAGGAGAT GGCCGGCAGC TGGAGCATGT GGACCTTGCT 
ATTATCCCCG GGCAACTGGG CGTAGCTGAG AATGGCGCTA TCTGGGTGAC GGAAAGTGAG 
ATTGAAGTAA GAGTATTACC TTTTATCACG CAACATCTGG CGATTGTTAT TGACAGTAAG 
GATATCCTGC CAACCATGCA CGATGCCTAT GCGCGTATTG GCGAGCCGTC GACTGGTTTC 
AGTGCGTTTA TCGCCGGACC ATCCAAAACG GCGGACATCG AACAGTCATT GGTATTAGGC 
GCGCATGGGG CGAAGAGTCT GACTGTCTTT ATGATCAGAT AA
 
Protein sequence
MSREAILAAI KKNQPEYQAL PDLSGFGQAG PGDPAAFKKV VETLGGQVYE INSFTEIQAL 
VAAHYTDLKQ VVAIREEYLP GAATQWQTGD GRQLEHVDLA IIPGQLGVAE NGAIWVTESE 
IEVRVLPFIT QHLAIVIDSK DILPTMHDAY ARIGEPSTGF SAFIAGPSKT ADIEQSLVLG 
AHGAKSLTVF MIR