| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4888 |
|---|
| Symbol | |
|---|
| ID | 8361064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 6116959 |
|---|
| End bp | 6117549 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644967038 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_003124523 |
|---|
| Protein GI | 256423870 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.156233 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.549385 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTCAACA ACCAGGAGAA GTTATTGTTT ACTATATATG TAGTAGTTTA TGATAAGGCG
AGCCTCGTAA TTGAAATACC TGTGTTTTTT AAGCAGTCAA CGATGCAATT TGGCATGACT
AATGCTGCTA TAATGCGACT TATAATTTAT CCTCCATTAA ACAATAATGA TATGGCAAAG
CATGGTCCCC TGCTGATATT GGAAGATGAT GAAGATGACC GCGAAATATA CGTGAATGTG
TTGAAGGAGA TGGGAATGCG TAACGAAATC TTTTTTTTTG ATGCCGGAGA TGCGTTGTTA
ACTTATCTGC AGACAACCAC CGACAGACCG ATGATAATTA TTGCAGATAT AAATGTGCCG
AGAATGAATG GTTTGGAGCT CAGACGCCAG ATCAACCTGG ACGAAAGGTT AAGAAAGAAA
AGTATTCCAT TTGTATTTCT TACTACCATT GAATCACGAG AAATCGTTGA TGAAGTTTAT
GATCTGACCG TACAGGGATA TTTTATCAAA AAACCATTTT ATGATGATAT AGCCAGGCAA
ATCAGGACTG TTCTTGAATA TTGGCTGATC GCAAGACATC CCAATCAATA G
|
|---|
| Protein sequence | MLNNQEKLLF TIYVVVYDKA SLVIEIPVFF KQSTMQFGMT NAAIMRLIIY PPLNNNDMAK
HGPLLILEDD EDDREIYVNV LKEMGMRNEI FFFDAGDALL TYLQTTTDRP MIIIADINVP
RMNGLELRRQ INLDERLRKK SIPFVFLTTI ESREIVDEVY DLTVQGYFIK KPFYDDIARQ
IRTVLEYWLI ARHPNQ
|
|---|
| |