| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4854 |
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| Symbol | |
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| ID | 8361030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6071711 |
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| End bp | 6073336 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644967004 |
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| Product | sigma54 specific transcriptional regulator, Fis family |
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| Protein accession | YP_003124489 |
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| Protein GI | 256423836 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.246176 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0147757 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGATGT TTTCGGAGCA ACTTGTACAA AAAGAGAAAG AGCAGGCTAT TTTGCTGGAG
TTGAGTAATA GAATCGCGGC TGCGCGGCAC CGGGAAGATC TCTGGGATAA TCTGATTACA
GCACAGCTGC TGGAACTTTT TAACAGTAAA TACTACACCA TCTGTATGAT CAATGAGGAT
GGTGTGACAC ATTCGCCTTT TCTACATAGC GAGGAATCGA CTATAAAATC CAGAACAGGC
GAGACGCCTA TCATCAGTGA TCTGCATCCG ATTGAGGACG GGGTTTTTAA CCTTGTGCTG
GAAGCAGACG GTCCCGTGAG CTTTGAACTG CAAAAGCTCA TGCGGGGCAG ACTGGTACCG
CCTTATATCT ATCGCTGGTT CAATGTCGGT GTTGTGGAAA TGATGGCGGT AAAGATCTGT
AATGGTCAGC AGCCGAAGGG TCTATTGTAT TTATTTACCG ATCAAAGGGA TGCATTCAGT
GAGGTGGATG CCCGGCTGAC CAACGCTATT ACCAATATAC TTGGTATCGG GATCAGTAAT
ATCCTGGCGA ATGAAACGAT CGAAAAGCAG TTGCAGGAGA TTGAACGCTT CCGCCAGAAA
TTACAGAACG AGAATCATTA TCTGCAGGAG CAGCAGGGTT TACAGAATAC GTTTGCCGAT
ATTGTAGGTA CTTCTGCCGA GATGCAGCGC CGTATTACCA TTCTTTCCAG GGTGGCTCCT
TCGGAATCTA CCGTATTACT GCTGGGAGAG ACGGGAACGG GTAAAGAAGT GTTTGCGCGT
GCTATTCATG CCGGCTCTCC GCGCAGGGAC AACCTGATGA TTAAGGTAAA CTGTGCGGCT
TTACCACCCC ATCTGATCGA AAGTGAGTTG TTCGGGCATG AGAAGGGGAG TTTTACCGGC
GCGACGCAGC GCAGGATCGG GAAGTTTGAG CTGGCGGATC ACAGTACGTT ATTCCTCGAC
GAGATCGGCG AATTGCCTTT GGAGTTTCAG TCGAAATTAC TCCGTGTTTT ACAGGAAAAG
GAAATAGAGC GCATCGGGGG GAAGGGTTCT ATTAAAGTGA ATGTGCGTAT TGTGGCGGCT
ACGAACCGTA ACCTGGAAGA AGAGGTAAGA GCGGGGCGTT TCAGGAGTGA TCTGTATTAT
CGTTTGCATG TATTCCCTAT TGCGATTCCA CCGCTTCGTG AGCGGAAGGA AGATATACCG
GCACTGGCGA ACCATTTCCT GCAACGCTTT GCTGCGAACA GCAGGAGGGA GGCGCCTTCC
ATATCGGCGA AGGCCATGGA GGGGCTGATG CATTATGAGT GGCCGGGTAA TGTGCGGGAG
CTGGAACATC TGATGGAGAG AACTTTGCTG CTGACCACCA CACCGGTCAT TGCAAAGATA
GACCTGCCGG GTGTGCCTGT TACGGCGTCC AAAGACCCGG ATAGTACATT TATACTGCCC
CTTGACCTGA TGGAGAAAGA GTATATCCTG AAGGTATTGA AGCTTTGCAA TGGCAGGATT
GCCGGGCCTA ACGGGGCCGC GGCAAAACTG AAACTGCCTT CTACCACGCT GAATTCGCGA
ATGAAAAAAT TAGGTATTAA AAAGTCGCAT TACGTCAATG TAGACGGCGC GTCCCAGGAG
GAATAA
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| Protein sequence | MEMFSEQLVQ KEKEQAILLE LSNRIAAARH REDLWDNLIT AQLLELFNSK YYTICMINED
GVTHSPFLHS EESTIKSRTG ETPIISDLHP IEDGVFNLVL EADGPVSFEL QKLMRGRLVP
PYIYRWFNVG VVEMMAVKIC NGQQPKGLLY LFTDQRDAFS EVDARLTNAI TNILGIGISN
ILANETIEKQ LQEIERFRQK LQNENHYLQE QQGLQNTFAD IVGTSAEMQR RITILSRVAP
SESTVLLLGE TGTGKEVFAR AIHAGSPRRD NLMIKVNCAA LPPHLIESEL FGHEKGSFTG
ATQRRIGKFE LADHSTLFLD EIGELPLEFQ SKLLRVLQEK EIERIGGKGS IKVNVRIVAA
TNRNLEEEVR AGRFRSDLYY RLHVFPIAIP PLRERKEDIP ALANHFLQRF AANSRREAPS
ISAKAMEGLM HYEWPGNVRE LEHLMERTLL LTTTPVIAKI DLPGVPVTAS KDPDSTFILP
LDLMEKEYIL KVLKLCNGRI AGPNGAAAKL KLPSTTLNSR MKKLGIKKSH YVNVDGASQE
E
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