| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4840 |
|---|
| Symbol | |
|---|
| ID | 8361016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 6046758 |
|---|
| End bp | 6047420 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644966990 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
|---|
| Protein accession | YP_003124475 |
|---|
| Protein GI | 256423822 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR03351] phosphonatase-like hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0176298 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0000825577 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGTCT TTGACATGGC CGGTACGACC ATCAATGAAG ACAATCTGGT ATATAAAACA
TTAAGAAACG CCATTAACGA GGCAGGATTC AGCTTCAACC TTGAACAGGT GCTGGCCGAA
GGCGCGGGTA AAGAGAAAAA ACAAGCCATC CGCGCAGTGC TTTCAACATA TGCAGGTGTA
GAAGATCAAC AACTGACCGA TACCATCTAC AAGCACTTCA TTATACAACT GACCGAAGCC
TATGCAAAAG AGGATATCTC TGCACAGCCC TATGCGGCAG ATCTGTTTGC AGCACTTAAG
GAAAGGAATA TCCTGAGGAT ACTGAATACA GGCTACGACA GACAAACAGC CACAAATATT
CTTCATAAAA TAGGCTGGCA GGAAGGGCTT GAATATGATG CATTGGTAAC CGCCAGTGAT
GTACCACGCA ACAGACCGGA ACCGGATATG ATCCTGTTTG CTATGCAACA GTTTCACATC
AACGATAGTA GTGCAATAGT GAAGGTGGGG GATTCTACTG TTGATATTGA AGAAGGAAAA
AATGCAGGCT GCGGAATGAG TATCGGTATT ACCACCGGCG CTCATACAAA AGCACAGCTG
GAAACCGCCG GTCCTGACTA TATTATCAGT AACCTGATGG AGCTGTTGCC CTTGCTGCGA
TAA
|
|---|
| Protein sequence | MLVFDMAGTT INEDNLVYKT LRNAINEAGF SFNLEQVLAE GAGKEKKQAI RAVLSTYAGV
EDQQLTDTIY KHFIIQLTEA YAKEDISAQP YAADLFAALK ERNILRILNT GYDRQTATNI
LHKIGWQEGL EYDALVTASD VPRNRPEPDM ILFAMQQFHI NDSSAIVKVG DSTVDIEEGK
NAGCGMSIGI TTGAHTKAQL ETAGPDYIIS NLMELLPLLR
|
|---|
| |