Gene Cpin_4776 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4776 
Symbol 
ID8360952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5950278 
End bp5950613 
Gene Length336 bp 
Protein Length111 aa 
Translation table11 
GC content46% 
IMG OID644966927 
Producttranscriptional regulator, XRE family 
Protein accessionYP_003124412 
Protein GI256423759 
COG category[K] Transcription 
COG ID[COG1813] Predicted transcription factor, homolog of eukaryotic MBF1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0811435 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.544838 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACACAG GTAAAATCAT TGCCGATCTC AGAGATAAAT TAGCATGGTC GCAAACCGAC 
CTAGCAGATA AAAGCAGCGT ATCCAGGGTG ATGATCGGGA AGTATGAACG CGGGGAAGCC
GTACCGTCCA TTGATGCTGC TAAAAGGATT GCAGATGCGC TGGGGGTTAG TCTGGACTAC
CTGGTAGGTG AAGGGATAAA TGCCCGGTTT GATAAAAAGA CGCTGAAGCG GCTGGAAGAA
CTTGAGTTGC TGGAAGAGGA TAAGAAACGG ATACTCTATG ATCTGATTGA TACGTATATC
AGAGATGCGA AAGCCAGAAA GGCATATGCG CAATAA
 
Protein sequence
MNTGKIIADL RDKLAWSQTD LADKSSVSRV MIGKYERGEA VPSIDAAKRI ADALGVSLDY 
LVGEGINARF DKKTLKRLEE LELLEEDKKR ILYDLIDTYI RDAKARKAYA Q