| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4704 |
|---|
| Symbol | |
|---|
| ID | 8360880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 5861191 |
|---|
| End bp | 5862687 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644966857 |
|---|
| Product | polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_003124342 |
|---|
| Protein GI | 256423689 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.318996 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.409753 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAC TGCGGAAAAA GAGTATAGTT TCTATCGTAT GGACATATGT TGGATTTATT
TTCGGTGCTA TAAACGTATT CTTATCTGCA AGATATCTCC TGCCGGAGTA TAACGGTCTG
ACCCGGGTAA TCCTGGAAAT GGGGGTACTC TTCTCTTCCT TTGCTACTTT CGGTGTCCCT
ACCCTGCTTG GAAAGTTTTA TCCTTATTAT AAGGACCGGA TGGAGAAAAA ACACTCCGAT
CTGCTGACAT TGGCACTGGT CATTACCACG ATAGGATTCA TCCTGCTTTC GACAGGTGTT
TATTTTCTCA AACCTTTTAT CAGTCGCAAG TTTTCCGGCA AATCACCCTT GCTGGTAGAT
TACTACTATC TCGCATTGCC GATCACCTTT TTCCTGACTT ATCTGAATAT ACTGGAAGCA
CATGCCTGGA ACCTGTTCAA GACGGTCATT TCAAATTTCT TCAAGGAAGT CGCTTTCCGT
ATCGCCAATC TCCTGCTGCT GGCAGTATAT ATACTGAACT GGATCTCCTT CGAGACCTTC
ATTATGTTGT TCAGTTTATT ATATGGTGTT TCCTTCCTTG GATTGCTGAT CTACATGATC
TCTATCGGTG AGATGAATAT CACATTCAAC ATCAGTAAAC TGACCAGACG TCTCTGGACG
AAAATGCTGC CTTATGTGTT TTTCATGCTG GCGAGCAATG TCGTATTGAT ATTCAAAGAC
AGTTTTGACG GACTCGCCAT CTCCAGTATG CATGGACTGG AATATGCGGC CGTATTTGTA
CTGGTCAACT ACCTGGTCAC ATCCATCGGT GTACCGCAAA GAAGTGTGGT AAGTATTGCG
TTCCCGATCA TCGCGAGAGC ATGGAAAGAA AAAAACATGG GCAAACTGGC GGATGTTTAT
ACAAAAACTT CCATCACGCT GTTATTGATA TCAACCTTTC TTTTCGGCCT GGTATGGATC
AATTTTGATG ATGTGCTGAC CTTCCTGAAA CTGCCGGAGA TCTACAGAAT GGGTAAGACC
ACATTGTTGT TGCTGGCCAT TGCGAAGATC GTAGAATTAG GTACCGGCGC CAGCGGACAG
ATTATCATCT CTTCCCGCAG GTGGAAGTTT GAGTCTTATT CCAATATGAT TTTACTGGCA
GCATCTGTAC CGGTGAATTA CTATCTGATC AAACATATGG GTATTCCTGG TGCAGGTTGG
GCCAACCTCA TTCTGGTAGT AGTGTTCAAT GGTATCCGTT TTGCTTATCT GTGGTATAAC
TACAAGATGC AGCCGTTTAA TCTGAAAACG GTCTATGGTA TTTTGTTACC GGTGGTACTG
GTGCTGATCA CCACTACACT GATCAACTTC TCTTCTCCCC TGCTGAACAT CATTTTGCGC
AGCGTCATTT TCGTTGTCGG TTTTATTTCC ACCACACTCC TGTTAGAGAT TTCTGAAGAT
GCAACAGGTG TATTCCGTAC CGTGAAAAAG CGACTGGGCA TCGGCAAACC CGAATAA
|
|---|
| Protein sequence | MSELRKKSIV SIVWTYVGFI FGAINVFLSA RYLLPEYNGL TRVILEMGVL FSSFATFGVP
TLLGKFYPYY KDRMEKKHSD LLTLALVITT IGFILLSTGV YFLKPFISRK FSGKSPLLVD
YYYLALPITF FLTYLNILEA HAWNLFKTVI SNFFKEVAFR IANLLLLAVY ILNWISFETF
IMLFSLLYGV SFLGLLIYMI SIGEMNITFN ISKLTRRLWT KMLPYVFFML ASNVVLIFKD
SFDGLAISSM HGLEYAAVFV LVNYLVTSIG VPQRSVVSIA FPIIARAWKE KNMGKLADVY
TKTSITLLLI STFLFGLVWI NFDDVLTFLK LPEIYRMGKT TLLLLAIAKI VELGTGASGQ
IIISSRRWKF ESYSNMILLA ASVPVNYYLI KHMGIPGAGW ANLILVVVFN GIRFAYLWYN
YKMQPFNLKT VYGILLPVVL VLITTTLINF SSPLLNIILR SVIFVVGFIS TTLLLEISED
ATGVFRTVKK RLGIGKPE
|
|---|
| |