| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4558 |
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| Symbol | |
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| ID | 8360731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5696931 |
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| End bp | 5698598 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644966713 |
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| Product | RagB/SusD domain protein |
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| Protein accession | YP_003124201 |
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| Protein GI | 256423548 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.001407 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0159313 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACTA AGCACATTTT TTATTCCATT ATAGCGCTTG CCGGCGCAAC CTTCGCCTCC
TGTAAAAAAG ATTATCTGGA TGTGGTTCCG ACCGACAGGG TGGCTGATGT AACGATCTTA
TCTGACTCGT CTCTATTCAA TGATTATGTG ATCAACCGGT ATATGAGCAT CAAGCTCCAG
GATAAGGAAG GAGAGGGTAC GAACCCGGGT TTTGGCAGAG GTTTTGAATA CGCCATGTGG
TGTTCTGCCA GTGACGAGGC GATCTATAAC AATGATGATA ATACCTGGCT GATGCAGCGT
GGTCTGCTGG CGCCGGAGAA TACAGGTATT GCCGGCACCA TCTGGGGAAG AAGTTACCGG
AGTATCCGCG AGTGTAACTA CGGACTGAAT AACATTATGC AGGTGCAGAT GAGTGAAGGA
CTGAGAAACA AACTGAGAGG GGAACTGCAT TTTATACGCG CTTTCCGTTA TCATGACCTG
ATCAGGAACT ACGGTAAGGT CGTACTGGTG GGAGATAAAG TATATAATCT GAGTGATAAT
ATGGCAGAAG CCAATTATAC CAGGTCATCC ATAAAAGAAG GCATTGACTA TGCAGTAGCC
GAACTGGATT CTGCGGTACA ATACCTGCCT GCTGCCAACG ATGATAAATG GCAGCTGGGT
CGTGCTACAA GAGGCGCCGC ACTGGCTTTG AAAGCACGTT TGTTATTGTA TGCGGCAAGT
CCGTTATATA ATACAGGCAC CTGGGAAGCG GCAGCAGCTG CTGCTAAAGC AGTAATGGAC
CTTATGCAAT ATTCAATCGC ACCGGATTAC GCTAAATTGT TCCTCAACGT GAACAACAAT
GAGATCATTT TTTGTCGTCA GTATGCGATC GGTGCACGTC ACGTGTGTAT GGAAATCGCA
AATGGTCCTA ATGGTTACAA CGGCTGGGCA GGTAATTCAC CGCTGCAAAA CCTGGTGGAT
GCCTATGAGA TGAAAAGCGG TAAGCCAATC ACGGATGCTA CTTCCGGATA CGATGCGGCT
AATCCGTATG CCAACAGGGA TGCCCGCTTT TACGCCAGTA TCCTTTACAA TGGCGCCAGC
TACAGAGGCT CTACCATTCA GGGATATACA CCTGGTGGAA AGGATAGTAA AGATGGTCCT
TCCAACTGGA ATAGCACCAA AACAGGTTAC TATCTGCGTA AATTCATGGA TGATAACAAT
CCGATCGACA ACCCGTGGGA AGTGGCTGGG CTGCAACCCT GGATCTATCT CCGCTATGCA
GAAGTACTGC TGAATTATGC AGAAGCACAG AACGAAGCAG TAGGGCCGGA TGCAACAGTC
TATGCCGCTA TCAATCAGAT CAGGCAGCGT GAAAGTGTAA AACAACCCGT GCTGGCAGCA
GGTATTTCCC AGTCACAGAT GCGTGATGTA ATCAGAAGAG AACGTCAGGT AGAACTGGCC
TTCGAAGAGC ATCGTTTCTA CGACGTACGT CGCTGGAAAA TAGCCATGCA GACAGAAAAT
GTGCCTGCCT ATGGTGTAGA TATTACTATC GCAAATGGTA AAACAGTATA TACAAGAAAA
GAAGCCCTGA GCGGACGCCT CTTCGCTGAA AAGAATTACT GGTTACCAAT TCCAAGAACA
GAAATCCTGG CTACCAATAA CAAGCTGGAA CAAACCACCG GATATTAG
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| Protein sequence | MKTKHIFYSI IALAGATFAS CKKDYLDVVP TDRVADVTIL SDSSLFNDYV INRYMSIKLQ
DKEGEGTNPG FGRGFEYAMW CSASDEAIYN NDDNTWLMQR GLLAPENTGI AGTIWGRSYR
SIRECNYGLN NIMQVQMSEG LRNKLRGELH FIRAFRYHDL IRNYGKVVLV GDKVYNLSDN
MAEANYTRSS IKEGIDYAVA ELDSAVQYLP AANDDKWQLG RATRGAALAL KARLLLYAAS
PLYNTGTWEA AAAAAKAVMD LMQYSIAPDY AKLFLNVNNN EIIFCRQYAI GARHVCMEIA
NGPNGYNGWA GNSPLQNLVD AYEMKSGKPI TDATSGYDAA NPYANRDARF YASILYNGAS
YRGSTIQGYT PGGKDSKDGP SNWNSTKTGY YLRKFMDDNN PIDNPWEVAG LQPWIYLRYA
EVLLNYAEAQ NEAVGPDATV YAAINQIRQR ESVKQPVLAA GISQSQMRDV IRRERQVELA
FEEHRFYDVR RWKIAMQTEN VPAYGVDITI ANGKTVYTRK EALSGRLFAE KNYWLPIPRT
EILATNNKLE QTTGY
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