| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4548 |
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| Symbol | |
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| ID | 8360721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 5680683 |
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| End bp | 5684012 |
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| Gene Length | 3330 bp |
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| Protein Length | 1109 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644966703 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003124191 |
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| Protein GI | 256423538 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.106269 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGAAA AGAAGTCATG GAAACAGCCT AGTCTACGCT CGTCAGCCGT CAGACATGTT
CGTAAAAAAT GTTTACACCT TAGCATCCTG GTGGGATGCC TGTTACTAGT GGGACAATCC
TATGCACAGA AAGTCACTAT GACGATTAAG TCCGGTACCC TGGAACAAGC GTTCCGGCAG
ATCGAAAAAC AAACCGGACA AAGTTTTATC TACACAAAAA GTCAGCTGAA ACAAGCGGCT
CCTGTGAACA TCAGTACGCA GCAACAGGAT CTCGACCAGG TTTTAAAACA ACTATTCAAT
AACCAACCAT TCACTTATTC CCGTTCCGGT AATTTCATTG CCGTGCGGGC TAAAGAAGCA
CAGACGGAAG CCAATGCCGC TATTAACGAC ATTACCGTAA GCGGTGTCGT AAAAGATGCC
AGTGGCAGAC CGCTTCCCTC TGTGTCTGTC GTAGTACCAG GTACGCCTTT TGGCGCTATG
ACCAATGAGA AAGGCGAATA CACCATTCCC CGTGTACCGG CCAATGCCTA CCTCCTTTTC
TCTTATATAT CCTATCAGCC GCAGGAAGTG GCGGTAAGAG GCAGAAACAC GATCAATACA
GTGTTACTGG AGCAGGTAAG GGCGCTGGAT GAAGCAGTCA TTATCGGTTA TGGAACTACT
ACCAAAAGAC TGAACACCGG GGCGGTAAGC AGTATTACGG CTAAAGAAAT CGGTATACAG
CCGGTAGCGA ATCCGCTGGC AGCACTGCCT GGTCGTGTTC CGGGTGTACA GATCACACAA
CAGAACGGTT TACCAGGTAG CGCAGCAGTC GTACAGATCC GTGGCCAGGG CTCCCTCAGT
TATGGTAACC TTCCGCTGTA TGTAATAGAT GGTGTACCCT TCACCAACTT CAGCGGCGCA
CAACCAGTAA CTGATAACCT CAATTCCTGG GGTACCAGTG GGGCTAATGG CGGTATCAGT
CCCTTCAGTA TGATCAATCC GGATGATATC GAACGTATGG ACATCCTGAA AGACGCCGAT
GCGACCGCTA TCTATGGTGC GCGTGGTGCA AATGGCGTTA TCCTGATTAC CACGAAAAAA
GGAAAAGCAG GCAAAACAAG ATTCAATGCC AATGTCTATA CCGGTACGGG GAAAGTCGGC
CGTTTCATCC CGATGATGAA TACGCAGGAA TATCTTGACC TACGTAAAGA AGCATTTAAA
AATGATGGCC TTACGCCTAA CACAGTCAAT GCGCCTGAAC TGACCGTTTG GGACCAGAAC
GCATATACTG ACTGGCAGAA ATTCCTGCTG GGCGGCACCG CGCACAATAC CAATGCAGAG
GCATCTATTT CCGGAGGAGA TGCGAAAACA CATTTCCTGT TCAGCGGGGG CTACCATAGA
GAGACGACTG TATATGACAG CGATTTTAAT AACACCCGTC TGACCGGCAG GCTCTCTGCT
GACCATACCT CTGCGGATAA TAAATTCTAT GCCGCCATTA CAGGTAACTA TTCTTATGAC
AAGACTTTCT TACCTGGTTC AGACCTGACC TCCCTGTATA ACCTGCCGCC TAATATGCCG
CTGTACGACA ACCAGGGTAA ATTAGCCTGG TCACAGGGTT TTAGTAATCC GCTGGCATTG
CTCAAAAGGG AATACAATGG TAATACTACC AATTTTATTG CCAATGCCAA TCTCCGCTAT
ACGATTATCA AGGATCTGAA TGTGAAAGTG AACCTCGGTT ACACGACCAC ACAGTTAGAG
CAGAATACTA CGCTACCGGC ATCCAGTCAG AACCCGGCCA ATAACCCGAC CAGTTCTGCC
AACTTTACCA CCAATAAAAC GCAGAACTAT ATCGTAGAAC CGACCGTAGA CTATACCCGT
GATCTTGGTC AGGGTAAACT GAACGTGATG GTCGGCGGTA CAATACAGCG CAGTCTGTCC
AATGGTAACT ATATATCAGG TACGAACTAT AGCAGTGAAG CCCTGCTTCA TACGTTGATC
GGCGCAGGTC TCACCACCGT GAGCTATAAC AACTACTTCG ACTATAAATA TGCTTCCCTC
TTCGGTCGTA TCAATTACGA CTATCGGAAG AAATACCTGC TCAATGCGAC TTTCCGCCGC
GACGCCTCTT CCAGGTTTGG CCCGGATAAT GCAATCGCCA ATTTCGGCGC AATCGGTGCA
GGATGGTTAT TTACACAGGA AAACTTTGTA GCTGATAATA TCGACTGGCT GAGTTTTGGT
AAACTAAGGG TCAGCTATGG TACCACCGGT AACGACCAGA TCGTTAACTA CATCTACCTG
CCATTACTTT CTTCCGCAGG CACCTACCAG GGACAAACTG CCCTGGCGCG TGGAACCTTA
CCAAATCCGG GTGTAAAGTG GGAAACTACC CGCAAACTGG ACCTGGCCCT GGAACTTGGT
TTTCTGAAAG ACAGGATCAT GCTGGTAGCT GATTATTACC GTAACCGTTC CAGCGATCAG
CTTTTATCAG CCGCTTTGCC AACACAGGCC GGTTATAACA GTTATACTGT GAACTTACCG
GCCGTGGTAC AGAACAGCGG TCTCGAACTT GAACTGAACA CCACTAATTT CAAGCGTAAG
CATTTCAGCT GGACGACCTC CTTCAATGTG ACTTTCCCGA AAAATAAACT TGTCTCATTC
CCTGGTATTG AAAAGTCATT CTATGCAAGC AGCTATCTTA TTGGAGAACC GATCGACCTG
GTAAGAAGGT ATGTATATAC AGGTTATGAT CCTGCAACGG GTATCCCGCA ATATGCGGAC
CTGAACAAGG ATGGTGCGAT TGACTTTACC AACGACAGAC AGGTCATCCA TCCGGGTACA
CCTTTCTTCG GAGGATTGAA TAACTCCTTT ACGATCCACC AGTTCGATGT CTCTTTCTTC
TTCCAGTTCA ACCACCGGAA CGGATCGACC AACAGTTTCA GTACGCCGGT CGGCAGCAGC
AGAAGCAATC AGAATATTTC CCTGCTGGAC AGATGGAGAA ATCCGGGCGA TGCAGCCACC
TACCCTGCTG CTACGTCTAC TTCCGGTACA CCGATCTACC TGGCATATAC CCAGTACAGC
AGTTCTACGG CGATGTGGGG AGATGCGAGT TACCTGAAAC TGCGTTCTGC CAGTCTGGCT
TACAACCTGC CTTCTGAATG GCTGAGGAAA ATAAAAGCCA GCAATATTAA AGTGTATGCA
GAGGCACAGA ACCTGTTCAC CTGGTCGAAG AACAAATACA TCTTCGATCC TGAAACAAGT
GTATCTGGTG GTGCTCCCGG ACTGGGAACC GGCGCTATTG CCCTGCCTCC GCTGAGAACG
ATCGTACTGG GTGTTAACTG TTCATTTTAA
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| Protein sequence | MPEKKSWKQP SLRSSAVRHV RKKCLHLSIL VGCLLLVGQS YAQKVTMTIK SGTLEQAFRQ
IEKQTGQSFI YTKSQLKQAA PVNISTQQQD LDQVLKQLFN NQPFTYSRSG NFIAVRAKEA
QTEANAAIND ITVSGVVKDA SGRPLPSVSV VVPGTPFGAM TNEKGEYTIP RVPANAYLLF
SYISYQPQEV AVRGRNTINT VLLEQVRALD EAVIIGYGTT TKRLNTGAVS SITAKEIGIQ
PVANPLAALP GRVPGVQITQ QNGLPGSAAV VQIRGQGSLS YGNLPLYVID GVPFTNFSGA
QPVTDNLNSW GTSGANGGIS PFSMINPDDI ERMDILKDAD ATAIYGARGA NGVILITTKK
GKAGKTRFNA NVYTGTGKVG RFIPMMNTQE YLDLRKEAFK NDGLTPNTVN APELTVWDQN
AYTDWQKFLL GGTAHNTNAE ASISGGDAKT HFLFSGGYHR ETTVYDSDFN NTRLTGRLSA
DHTSADNKFY AAITGNYSYD KTFLPGSDLT SLYNLPPNMP LYDNQGKLAW SQGFSNPLAL
LKREYNGNTT NFIANANLRY TIIKDLNVKV NLGYTTTQLE QNTTLPASSQ NPANNPTSSA
NFTTNKTQNY IVEPTVDYTR DLGQGKLNVM VGGTIQRSLS NGNYISGTNY SSEALLHTLI
GAGLTTVSYN NYFDYKYASL FGRINYDYRK KYLLNATFRR DASSRFGPDN AIANFGAIGA
GWLFTQENFV ADNIDWLSFG KLRVSYGTTG NDQIVNYIYL PLLSSAGTYQ GQTALARGTL
PNPGVKWETT RKLDLALELG FLKDRIMLVA DYYRNRSSDQ LLSAALPTQA GYNSYTVNLP
AVVQNSGLEL ELNTTNFKRK HFSWTTSFNV TFPKNKLVSF PGIEKSFYAS SYLIGEPIDL
VRRYVYTGYD PATGIPQYAD LNKDGAIDFT NDRQVIHPGT PFFGGLNNSF TIHQFDVSFF
FQFNHRNGST NSFSTPVGSS RSNQNISLLD RWRNPGDAAT YPAATSTSGT PIYLAYTQYS
SSTAMWGDAS YLKLRSASLA YNLPSEWLRK IKASNIKVYA EAQNLFTWSK NKYIFDPETS
VSGGAPGLGT GAIALPPLRT IVLGVNCSF
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