| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4497 |
|---|
| Symbol | |
|---|
| ID | 8360670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5596822 |
|---|
| End bp | 5600418 |
|---|
| Gene Length | 3597 bp |
|---|
| Protein Length | 1198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644966652 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003124140 |
|---|
| Protein GI | 256423487 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0452901 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.421044 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTATGC CTATCCAAAA GGGTAGCCGG TTAGTGAATC AAACGCTACG TATTATGCGA
TTATCAACCA TTTTGTTGCT GGCATTTATT ATGCAGGCAA GCGCCAAAAT CAGTTATTCG
CAGAACATCA CGTATACCTG CAAGGATGTG CCATTGGAAC AGGTATTCAG AATTATCAAG
CAGCAAACGG GCTATGTGGT GTTCTACGAT CAGGATCTGT TGGGAAAAAC AAAACCAGTC
TCTATCAGCG CTAAAGAAGT ACCGCTGGAG CATTTCCTGA AAAAAGCTTT AGACAATCAG
CCATTGGATT ATTCGATCGA AAACAAAACG ATCGTTATAT CCCGCAGAAC GGCGCCCGTA
CCAATGCCTT ATACAGCACC GCAGAAACTG CCGCTTGTAT CAGGGAAAAT CATTGATGAA
AGAGGGGTGC CGGTACCAGG GGCAATCGTA CGATTGATGC CTACTGAAGA CAGGGGTGCA
ACCACACAGA ATGACGGTAC CTTTATGATG GCCGCCGTAC CTGCTGGTAA CTATACCCTG
GAAGTAAGAC ACCTGGCTTA CCTCACTGCT CATAAAAAGA TTACGGTAAC GGACGGTGAT
GTCAATGTAA AGATCACCCT GACACCGCAG CAAAGAGAAC TTAGAGGTGT TGTCGTAAGT
ACCGGTTTTC AGAAGATCGA GAAAGCATCC ACACCTGGAT CATATACGGT GATCACTTCC
AAAGAACTGG AAGAGACACC TGATATCAAC CTGGCCAGAC GCCTGGAAGG TAAAGTACCT
GGCGTACGCT TTGACCCTGT AAATAATACC ATACAGATCA GAAGCGCCAA TAACTTCCTG
CAAAGTGCAC CATTGATCAT CATTGATGGT TTTCCGGCAA TAGATCAGAA CCTGAACCTT
CGTCCGGGTT ATACGCCTTT GTTCGGAGAT CAGTCAGGTA CCAATAACGC GGTACTGAGT
GCCTTCAACC CGAATGATAT TGAAAGCATC ACTTTCCTGA AAGATGCCGC TGCCACCTCT
ATATGGGGTT CCAGTGCCGC AAATGGTGTG ATTGTGATTG AAACCAAGAA AGGTAAAAGA
GGCGAAGCGA CTACCGTGAA CGCAGGTGCT ACCCTGAGTG TTTCGGCTCC TGTCAGTCTG
TCAAAACTGA AAACGATGAA CAGTGCGCAG TACATCGACA TGGAAAAGGA AATGTTTGAC
GCGAACTTCT ACCAGGACCC TTTCACACAC TGGCGTTTCA GTAATCCCAG TCAGGCAGTA
AGATATATGT TCCTGGCGAA ACGTGGCGAG ATCACTGATC AGCAGCGGGA TGCACAACTG
GAAAGACTGG CGGCTACCAA TAACCAGTCG CAGATCCGTG AAAACCTGCT ACAACCAGCG
GTGACACAGC AATATAACCT GTCGCTGTCC GGTGGAGGCA GAACCAGCAG CTACCATGTA
TCTGGTAACT ATTCCAAAGA TCAGCCTTCC TATAAAAGCA ACAGCGCCAC CAACTACTTT
ATCAATAGTA GCCTTACTTC TGATATCCTT GGCGGTCGTG CGAAAATCAC CGCAGGTCTG
ACTCATAACT ACTCTACCAG TTTTGTGAAT CAGGCCGCCA TACGCGCATT ACAACCTGGT
TCCTACGGAT TAAGACCTTA CGATCAGCTG ATAGATCAGA ATGGTCAATC TATCGACAAT
AGCTTCCTGT TGAAGCCGGA GATCGAGGAT AGTCTTCATA ATAAACTGGG CCTGCTCCCA
TGGACATATA ACGCGATCAA CGAACTGAAT TACTCAAAAA CCCGCTTTGA AAAACAGGCC
ACCCGTATGC AGCTGTCGCT GACTACACGT CTGACTCCCT GGGCGGATTT CCAGGTATCT
GGTATGTATC AGCGTAGTTC CCAGGAAATC ACCCTGCTGA ATGAACTGGG TAGTTATTTT
ACCAGGGATT TCCTGAATAG CGCCACTACC ATCCAGAACG GTAAACTGGT GTATGGCGTG
CCTGTCGGCG GCATCATGAC CAATACTAAC AGCTGGTCAA CTGACTACGG CACAAGAGCA
CAGCTGAATA TTAATAAACA GTGGAACCTG ATTCACAAAC TGACTTTCCT CGCAGGTACA
GATATCCGTG AGTCCAAGTC GAAAGGCTAC AGACAGATCC GCTATGGATA TGACGAAAAT
ACAGGTACTT CCCAGGCATT TAATCCAACG GTGAATTACA GTCTGTTCTT CGGTGGTACC
AGACAACTGG GCTACCAGGA TGGCGCTTAT GTAACAAACA TCCAGCGTTA CCTGTCTTAT
TTCTCTACTG CGAACTACTC CTTATTCGAT AAGTATTTTG TATCCGGTAG CATTCGTTTT
GACGATGTAA GCATGTATGG CATCGATCGT CGCAACAGGG CGATTCCTTT ATGGTCAGCT
GGTCTGAAAT GGGATCTCTT TAAAGAGAAA TTCATGGCTG GTCAGAAATG GCTGGATGCA
TTGGCCTTAC GTGCAACCTA TGGTACTGCC GGTACAGCGC CGACAGGCGG GTCTAATTTT
ACTGTCGTGA ATGTATATGC ACCAAACTCT CAGACCGGCC TGGGTTATGG TAGTCTGGGT
TCTCCGGGCA ATCAGGATCT GGGATGGGAA ACAACTTCCA CACTGAACGG TGGACTGGAC
GCATCTGTGT TACGTGGTTT GCTGAATATC ACCTTTGATT ACTACAGCAA ACGTTCCCGT
GGCATCGTGG TAAATCTGCC GTTTAATTCT ACCTACGGCT GGACCAGCGT AGCATACAAC
ACTGCTACGA TGAAGAGCCA TGGTCTTGAA CTTGGTCTGA ATGCGAATAT TATCCGTCGT
GCCAGCTGGG GGTATACAGC GAGTCTGAAC CTGGCTTATA ATACCAATAA GGTTACGGAT
GCCCGCTTCC CGGCTACTAC GACTTCTGTT TCCCAGGGTT CTCCTATTGT TGATCTCCCG
GTAGGCTATG TAATGGCCCT CGAATGGGCA GGTCTGGATG ATAAAGGACA GACCCAGATC
CGCAATGCGG AAGGAAAGAT CCTGAGTTCT ACTGACGGTA CTGCACTGAC AGCTGCTGAC
TGGCATTATA AAGGTCGTAA AGATCCGGTT GTATTCGGTG GTTTCATGCA CACTATTCGC
TATAAACAAC TCAGCCTCTC TGCAAGAGCG ACGTACTACC TGGGACATAA AGTACTGAAG
CAGGATATCC TGCCAGGTCT GTATCCATCG TTCGGACAGG CGCCAGGCTT TATCGGTAAT
TCCCAGGCGA TGGTGAACCG CTGGCGTAAA GCTGGTGATG AAGCAACTAC TAATATTCCT
GGTCTGCTGA ACGCCAACTC TACCAGCATC ATCAGATATA CGCAGTCTGA TATCAACGTT
ATCAGCGCTT CACACGCACG ACTGGATCAG GTGACACTGA GCTATATCCT GGCGGCAAAG
CTCCTGAAGA GAATGCCTGC TATCAAGAGC GTGACAATGG GCGCCACTGC CAGCAATCTG
GGTGTAATCT GGCGCAGGAA CAAGGACGGC ATCGATCCGA TATACCTGAC CACAAGCAGC
TATTCCAGTC TTGCACCAGC GCCGACCTAT ACTTTCAACG TAAATGTCTC ATTCTAA
|
|---|
| Protein sequence | MPMPIQKGSR LVNQTLRIMR LSTILLLAFI MQASAKISYS QNITYTCKDV PLEQVFRIIK
QQTGYVVFYD QDLLGKTKPV SISAKEVPLE HFLKKALDNQ PLDYSIENKT IVISRRTAPV
PMPYTAPQKL PLVSGKIIDE RGVPVPGAIV RLMPTEDRGA TTQNDGTFMM AAVPAGNYTL
EVRHLAYLTA HKKITVTDGD VNVKITLTPQ QRELRGVVVS TGFQKIEKAS TPGSYTVITS
KELEETPDIN LARRLEGKVP GVRFDPVNNT IQIRSANNFL QSAPLIIIDG FPAIDQNLNL
RPGYTPLFGD QSGTNNAVLS AFNPNDIESI TFLKDAAATS IWGSSAANGV IVIETKKGKR
GEATTVNAGA TLSVSAPVSL SKLKTMNSAQ YIDMEKEMFD ANFYQDPFTH WRFSNPSQAV
RYMFLAKRGE ITDQQRDAQL ERLAATNNQS QIRENLLQPA VTQQYNLSLS GGGRTSSYHV
SGNYSKDQPS YKSNSATNYF INSSLTSDIL GGRAKITAGL THNYSTSFVN QAAIRALQPG
SYGLRPYDQL IDQNGQSIDN SFLLKPEIED SLHNKLGLLP WTYNAINELN YSKTRFEKQA
TRMQLSLTTR LTPWADFQVS GMYQRSSQEI TLLNELGSYF TRDFLNSATT IQNGKLVYGV
PVGGIMTNTN SWSTDYGTRA QLNINKQWNL IHKLTFLAGT DIRESKSKGY RQIRYGYDEN
TGTSQAFNPT VNYSLFFGGT RQLGYQDGAY VTNIQRYLSY FSTANYSLFD KYFVSGSIRF
DDVSMYGIDR RNRAIPLWSA GLKWDLFKEK FMAGQKWLDA LALRATYGTA GTAPTGGSNF
TVVNVYAPNS QTGLGYGSLG SPGNQDLGWE TTSTLNGGLD ASVLRGLLNI TFDYYSKRSR
GIVVNLPFNS TYGWTSVAYN TATMKSHGLE LGLNANIIRR ASWGYTASLN LAYNTNKVTD
ARFPATTTSV SQGSPIVDLP VGYVMALEWA GLDDKGQTQI RNAEGKILSS TDGTALTAAD
WHYKGRKDPV VFGGFMHTIR YKQLSLSARA TYYLGHKVLK QDILPGLYPS FGQAPGFIGN
SQAMVNRWRK AGDEATTNIP GLLNANSTSI IRYTQSDINV ISASHARLDQ VTLSYILAAK
LLKRMPAIKS VTMGATASNL GVIWRRNKDG IDPIYLTTSS YSSLAPAPTY TFNVNVSF
|
|---|
| |