Gene Cpin_4400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4400 
Symbol 
ID8360573 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5479725 
End bp5480498 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content45% 
IMG OID644966559 
ProductNUDIX hydrolase 
Protein accessionYP_003124047 
Protein GI256423394 
COG category[R] General function prediction only 
COG ID[COG4111] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTACAA ACGATTTAGA CACTGCTTAT TTTGATGAAC AGCTGTATGT CAGGAATGTG 
GCTGTTGACA ATGTAATCTT CGGTTATCAT GACCGGGAAT TGAAAGTGTT GTTGCAAAAG
CCGAAGCTCC TGGACAAATG GACGGTAGCG GGTGGTTATA TCCTTAAAAC AGAATCAGTT
GAGGAAGCCG CGCATAATAT TGCTTTTATG CGGACGGGCT TAAAAGATCT TTTCCTGGAA
CAATTTAAGA CGTTTGGGAG TCCTACAAGA ATAAAGGACG AGTGGCTGGA CATAGAGAAA
GTATTTGAAA ATGCGGGTTT AAATCCGCCT ACGGAAGCCT GGATCCGGGA CTATAGTGTG
TCCATTGCCT TTTATACGCT CACGGAATTC TCGCTCGTTA CGGTGCAAAA AGCATCCTTT
GACGAGGCGA TTGAATGGTG GCCGGTGGCA CAGTTGCCCA GGATGATGTT TGATCATGCA
TTGATCATTG AAGAAGCCCT GAAAGCTTTG CAAAGAGATA TCTATCACTA CCCTATCGGA
TATGAGTTGC TGCCCCGGAA GTTTACGCTT CCGGAAATTC ATAGTCTGTA TGAGACTATT
CTTGGCAAAA CACTGGACAA CCGCAACTTC ACGAGAAAGC TGCTTTCAAC CGGTATCATC
AAAAAGCTGG ATGAAACCAG GAACATCGGC GCACACCGCT CCCCTTTCCT CTACAAATTT
GAGAAGAAGC AATACGATGC CGCCCTGAAG AACGGTATCT TCTTAGGCTT TTAA
 
Protein sequence
MGTNDLDTAY FDEQLYVRNV AVDNVIFGYH DRELKVLLQK PKLLDKWTVA GGYILKTESV 
EEAAHNIAFM RTGLKDLFLE QFKTFGSPTR IKDEWLDIEK VFENAGLNPP TEAWIRDYSV
SIAFYTLTEF SLVTVQKASF DEAIEWWPVA QLPRMMFDHA LIIEEALKAL QRDIYHYPIG
YELLPRKFTL PEIHSLYETI LGKTLDNRNF TRKLLSTGII KKLDETRNIG AHRSPFLYKF
EKKQYDAALK NGIFLGF