Gene Cpin_4379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4379 
Symbol 
ID8360552 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5444887 
End bp5445849 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content47% 
IMG OID644966538 
Producthypothetical protein 
Protein accessionYP_003124026 
Protein GI256423373 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0857974 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.00079087 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGAAAATG TATTAACCAG TGTCGCGGGT GAAAATAAAG CCCATAAAGA GATTCCCGGT 
AATCCTTCCG TCGCGACCAG CAGCAGGCAT CAACTCAATA CCCGTGCAAA CGGAGAACCC
CTAAGGGTAT TAAGCGAAGA GGATTGGCAA TTCTGGATAA CAAATGGGTA TATCGTTATA
AAACAGGCGG TCCCCAAAGA ACAGGTGCAG ATACTGGCAG ATTTCCTCTG GACATATGAA
AACAAAGACC CTAAAGACCC GAAAACCTGG TATAAACCCA CACTGCCTAT GAAAATGACG
GAACTCAATA ACACCGGTAT GGTGGAGATA TATAATCACC AGTATCTCTG GGATAACCGG
CAGTTTCCCA AGGTACATCA GGCTTTTGCG GATATATGGG GGATGGAGGA ATTATGGGTG
ACGATCGACA GGGCTAACCT GAATTTCCCT ATTCGTCCGG GCCATGAATA CAAGGGATTC
ATTCACTGGG ATTACGACCC GGAAACCAGG CCCCAGAATG TACAGGGTGT ATTGGCATTG
GCAGATCAGA CGGACGAAAA TATGGGCGGT TTTCAATGTA TACCGGAACT ATTCCGGACT
TACGATACCT GGAAACTGAC CCAGCCGGAA GACCGTAATC ATTTCAAACC TGACACCACA
GGTTTTACGC CTACCAAGGT GAAGATGGAG GCAGGTGATC TGCTGATATT TAACAGTTTA
CAGCCACATG GCATCCGTGT CAATAACAGC AAGGATAAGG TACGTATTGC ACAATATATT
TCGATGATGC CGGCAGAGCA GGATAATGAG GAAATGAGAC AATGGCGGAT CCGCTCCTGG
CAGGAAAAGA TGGTACCAGA GGGATATGCT TTCCCGGGTG ATCCTTTACA TAGAGAGAAA
CAGCATCCTA TCGCACAATT AAGCGAACTG GGAGAAAAAC TGCTCGGATT AAGGAAATGG
TAG
 
Protein sequence
MENVLTSVAG ENKAHKEIPG NPSVATSSRH QLNTRANGEP LRVLSEEDWQ FWITNGYIVI 
KQAVPKEQVQ ILADFLWTYE NKDPKDPKTW YKPTLPMKMT ELNNTGMVEI YNHQYLWDNR
QFPKVHQAFA DIWGMEELWV TIDRANLNFP IRPGHEYKGF IHWDYDPETR PQNVQGVLAL
ADQTDENMGG FQCIPELFRT YDTWKLTQPE DRNHFKPDTT GFTPTKVKME AGDLLIFNSL
QPHGIRVNNS KDKVRIAQYI SMMPAEQDNE EMRQWRIRSW QEKMVPEGYA FPGDPLHREK
QHPIAQLSEL GEKLLGLRKW