| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4332 |
|---|
| Symbol | |
|---|
| ID | 8360505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 5388712 |
|---|
| End bp | 5390559 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644966493 |
|---|
| Product | Ricin B lectin |
|---|
| Protein accession | YP_003123981 |
|---|
| Protein GI | 256423328 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.817761 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0720026 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA ACTTTAAACC ACTATGTGCA CTTTTGTTGC TTATCCTGCT ATCTGTGAGC
GACGGAGTTT TTGCTCAATC GGGCATTTAT GTCGGCGGGC ATTTCCGCAG AGAAAGAAAT
CATACGATCA CCGATTTAAA AGCCTCCGGA TTTACATACG TCATCCTATT CGACGTTACT
GTTCAGCCCA ACGGAGACTT AACTACAGAT GGACAAACCA TCTGCTCAAA CGGCACCTAC
GTTTTCGGAT CTACCAATCC AAACTATATT GCCGATGTAA CTGCGCTTAA AACTGGCGTT
ACTTCTATCA CCCGGGTAGA AACATGTGTA GGTGGCTGGG GAAGTCACTC TTATACAAAT
ATTAAAAATC TGGTCAGCAG CCAGGGTACG GGAGCAAGCA GTATCCTTTA CCGGAATTTT
AAAGCATTGA AAACAGCCAT TCCCTCTATT GATGCGATCA ACAATGATGA TGAAGAGGCA
TATGATGTTA ATTCCGCCAG CGCCTTCCAC GTGATGCTGG CTGACATTGG CTATAAAACG
ACGCTTGCCC CTTATCGTAA CAAGCCTTAC TGGCAAAGCG TAGCTACCAA TGTCAATAAC
CAGCGCAGTG GTGCTGTCGA CAGGATTTAC CTGCAGTGGT ATGAAGGTGG CGCCGGCAAC
AATCCATGTG ACTGGAATAT CAATAATATT CAGCTGCATA CGGGAGACCT CAATTATGAG
AATGGCAACA CGGTCGCTGA CAAGATGACC CGCGCTAAAA ATAACTGTAA CTCCAAAGGA
GGATTTTACT GGGTATATAA CGACAACAAT ATTAACCTGA AAGAACTCGC TAACAGGGTC
AATACCATCT TTGGTATACG CACCAAAAAC CAGCAGGAAG TAGCCAATTT CTACAATGAC
TGTGACTATA AAGGCTTTGC CAATGGCCTG GAAGTGGGCG ATTACGATCT GAGCAGACTC
CAGTCTTTAG GTATAGACAA CGACATCCTG TCGAGCCTCA CCGTGGCCGA AGGATTTGAA
GTGACTGTCT ACGATGACCA CAACTTTACC GGTACCTCAA AAACATACAG GGGAAACGTC
GCTTGTCTGG TAGCTGATGG CTTAAATGAC AAAGTTTCCT CGCTGCGCAT CCGCACTACC
GGAGCTACCA ATTTAGCAGG TACCTGGTTT ATTCAGAACC GGAATAGTGG CAAATATATG
GACCTGGCAG CTGAACAGGT ACAGGCAAAT GGCGGTAATA TTCAGCAATG GGAATATGTA
GGCGGTACCA ATCAACAGTT TCAGCTGATA CACCTGGGGG ATGGCGCCTA CAATATCAAG
GTAATTGCCA GTGGTAAATC TTTAGATGTT GACGGCATTA ATAAAGCCGA AGGAGCTAAT
ATACTGCAAT GGGATTATGT GGGCGGTTTT AACCAGCAGT TCGTACTGGT TCCAACTACC
GATGGATATT ATAAATTTAT TGCCAAACAT AGTGGCAGGA TTGCAGAAGT AGCAGACGCC
AGTTCGTCTA ATGGTGCGAA TGTCCGTCAA TGGGGTAATA ATAATCAAAC ATGTGGTCAA
TGGCGGCTGG TACAATCCGA AGCTGCCAGG ACAGCTGCAC CAAAGATAAC AGTGGCAGAC
AATAAGGATT TCACAATTTA TCCGAATCCT GCTGCTGAAA CGCTTTATTT CTCTTCCAGG
GAACTGATTG GCGCAAAAGT AGCGGTATCA GATATAGCGG GGCATATCGT CATCAATACC
GTTATGTCAG GTAGCAATAT TGATGTATCT GCACTTAAAC CGGGTTTATA TACTATTCGG
GTTATTAAAA GCGGTAAAAC TATTGTAAAG AAATTTATTA AGCATTAG
|
|---|
| Protein sequence | MKINFKPLCA LLLLILLSVS DGVFAQSGIY VGGHFRRERN HTITDLKASG FTYVILFDVT
VQPNGDLTTD GQTICSNGTY VFGSTNPNYI ADVTALKTGV TSITRVETCV GGWGSHSYTN
IKNLVSSQGT GASSILYRNF KALKTAIPSI DAINNDDEEA YDVNSASAFH VMLADIGYKT
TLAPYRNKPY WQSVATNVNN QRSGAVDRIY LQWYEGGAGN NPCDWNINNI QLHTGDLNYE
NGNTVADKMT RAKNNCNSKG GFYWVYNDNN INLKELANRV NTIFGIRTKN QQEVANFYND
CDYKGFANGL EVGDYDLSRL QSLGIDNDIL SSLTVAEGFE VTVYDDHNFT GTSKTYRGNV
ACLVADGLND KVSSLRIRTT GATNLAGTWF IQNRNSGKYM DLAAEQVQAN GGNIQQWEYV
GGTNQQFQLI HLGDGAYNIK VIASGKSLDV DGINKAEGAN ILQWDYVGGF NQQFVLVPTT
DGYYKFIAKH SGRIAEVADA SSSNGANVRQ WGNNNQTCGQ WRLVQSEAAR TAAPKITVAD
NKDFTIYPNP AAETLYFSSR ELIGAKVAVS DIAGHIVINT VMSGSNIDVS ALKPGLYTIR
VIKSGKTIVK KFIKH
|
|---|
| |