| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4308 |
|---|
| Symbol | |
|---|
| ID | 8360481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5367035 |
|---|
| End bp | 5369254 |
|---|
| Gene Length | 2220 bp |
|---|
| Protein Length | 739 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644966469 |
|---|
| Product | signal transduction histidine kinase |
|---|
| Protein accession | YP_003123957 |
|---|
| Protein GI | 256423304 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.057717 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAT TTCTCCTATA TACTTTTTTT GCCATCTTAT TTTTCTTGCC CGTACAGGGA
CAACAATTAT TGAGAAAATC GCCCGATGAA TTACGCCAGT TATTACAGAA AAGTGAACAG
GATAGTAACC GGATTCTGAT ATTGCATGCA ATGAGCAGAA TTTACCTCAA TCAGGTCTTC
GGCGATAAAA AGGAGACGCT GATGGATACA GTGATCGATA TTATTGATCA TGCGATCAGA
TTGAGTGACA CACTTCATTT AAAGCGGTTC CGGCTTGAAG GCATGTTAAT GAAAGGGGAA
GCTTATCTTG TCAAAGGAGA TATTCCTGAA GGCGAAAAAC GTTTTTTTGA GTTGGCAGCT
ATCTATCATA AGGATGGCGA TATTAATGCA GAAGCGCATA CCCTCGTATG GCTGGCGATG
AATCTGAAAT GGGAGAAAAA AGATACCAGC AGGATTCCTG CTTTGTATGA TAAGGCGATC
ACATTATATA AAAAGGTCGG TAGTGTTGAT GGAGAGGCCG ACGTACGTAT GCAGCTGGCA
GATTATCGTT TACTATTGAA GCAATTTAAT TTAGCAGAGA GGGAACTACT GCAGGCGTTA
GCACTTTTCC GGCAGACAGG GAACAAAAAA GTATCAAATG TGTATTATCT TCTTTCCGTT
GTCGACAGGT ATCGCGGTGC GTATGAAAAA TCACTCTTAT ATGCAACGAA GTGCGTTGAA
ACCACAGCGC AAAATACTGA TACCCTGGAT GTGTGTTTGT TTTACGGAGA GCTTGCCCTT
GTTTATGATG AACTGGGGCG TAGGGAAGAA AGCGTTTACT GGTACAGGAA AACGCTGCAA
ATGAGGATTC AGGGCAATAT AGATAGAGCC GTGATATTCA GAACGGCCAG CTTTATCATC
TCTCAGTTGA TTAAGCTAAA CAGAAAGAAA GAGGCCCTTG CTTTAATGGA TAGCCTGGTA
ATGGGAGGAC CGCCACAAAC AAAATATGAA AAGGCGGTTG TTGCACAGAA TTATGCTTAT
TGTTATGATG CGTTGAAACA GTATGCCGTA GCAGAACAAT ACTTTCTGCA AATGGCCGGA
TATCTTAAAG ACCATTCCTT TGATGCGGAA GAGGTTATCC TGAGTAACAA GGATATTGGA
CGATTCTATT TGCAACGGAA GCAGTTTGAA AAAGCACATA TTTACCTGAA TAAGGTGCTG
CCTGACAAGT GGCAACTCCG CTTAACAGAT CAGCGGGAAT TGTTTAGGAT GCTGTTTATC
GCCGATTCTG CACTGGGTAA TTACACGACT GCTATTAAAG ACCTGCAGCA ATACCAGTCT
ATAAATGATT CGCTTTACAA TGAACGGAAA AGCAGGCAGA TAGAAGAACT GATCATTCAA
TACGAGACAG ATAAAAAAGA ACAAAATATC CGCTTACTGG AAAAGGAGAA AAGGATACAG
CAAAATGAAC TGCTAAAAGA ACATAATACA AGACGCTGGA TAATAGGAGC GACATTTTTG
CTGATCATTA TAATAGGATT GCTGTTAAAT TACTCCCGGT TAAAAACCAG GACAAACAGG
GAGCTCAAGG CCCAGCAGAA GTTGATTGAG AAGAAAAACG AGTCATTACA GCATCTGGTC
GGGGAAAAAG AATGGTTAGT GAAAGAGATC CATCATCGTG TGAAAAATAA TTTTCACATG
GTAATGGGAC TTTTGCATAC ACAGGCAGCT TACCTCCATG GAGAGGAGGC CCGGCAGGCA
ATAACAGAGA GTCAGCAGCG TATACGGGCC ATGTCCCTAG TACACCAGCG ACTCTATCAG
TCAGAAGACC TGTCAGCCAT TAACATGGTG GAATATATTC ATGAACTGAT AGATTGCCTG
AAAGACAGTT TGCATACCGG ACGTGCCATT CAGTTTAACC TTCAGATAGA CCCCGTAAAC
CTGAACGTGA CAAATTGTAT CCCGATTGGC CTGATTCTGA ATGAAGCAGT GACGAATGCG
ATTAAACATG CTTTTCCGAA TAAAGAAGGG CGGATTGACA TTTCATTGAA ACGAATGAAT
CAGGACCATT TCCTGCTTAT TGTAAAAGAC AATGGAATTG GACTGCCGCC GGATTTTGAC
GGAACAAAGC AGGCTTCAAT GGGCATGAAA CTGATGCAGG GACTAAGTGA CGACCTTGAT
GCCAGTTTTC AGGTAAACAA TAATAACGGA ACAGAAATAT TGCTTGAATT TATCGTATGA
|
|---|
| Protein sequence | MMKFLLYTFF AILFFLPVQG QQLLRKSPDE LRQLLQKSEQ DSNRILILHA MSRIYLNQVF
GDKKETLMDT VIDIIDHAIR LSDTLHLKRF RLEGMLMKGE AYLVKGDIPE GEKRFFELAA
IYHKDGDINA EAHTLVWLAM NLKWEKKDTS RIPALYDKAI TLYKKVGSVD GEADVRMQLA
DYRLLLKQFN LAERELLQAL ALFRQTGNKK VSNVYYLLSV VDRYRGAYEK SLLYATKCVE
TTAQNTDTLD VCLFYGELAL VYDELGRREE SVYWYRKTLQ MRIQGNIDRA VIFRTASFII
SQLIKLNRKK EALALMDSLV MGGPPQTKYE KAVVAQNYAY CYDALKQYAV AEQYFLQMAG
YLKDHSFDAE EVILSNKDIG RFYLQRKQFE KAHIYLNKVL PDKWQLRLTD QRELFRMLFI
ADSALGNYTT AIKDLQQYQS INDSLYNERK SRQIEELIIQ YETDKKEQNI RLLEKEKRIQ
QNELLKEHNT RRWIIGATFL LIIIIGLLLN YSRLKTRTNR ELKAQQKLIE KKNESLQHLV
GEKEWLVKEI HHRVKNNFHM VMGLLHTQAA YLHGEEARQA ITESQQRIRA MSLVHQRLYQ
SEDLSAINMV EYIHELIDCL KDSLHTGRAI QFNLQIDPVN LNVTNCIPIG LILNEAVTNA
IKHAFPNKEG RIDISLKRMN QDHFLLIVKD NGIGLPPDFD GTKQASMGMK LMQGLSDDLD
ASFQVNNNNG TEILLEFIV
|
|---|
| |