| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4289 |
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| Symbol | |
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| ID | 8360462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 5348411 |
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| End bp | 5350564 |
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| Gene Length | 2154 bp |
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| Protein Length | 717 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644966451 |
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| Product | glycoside hydrolase family 5 |
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| Protein accession | YP_003123939 |
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| Protein GI | 256423286 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2730] Endoglucanase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.162807 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0359435 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCCC AAAACCTACT ATTCGTATTC CTGCTATTTT GTTTTGTGGC TCAGGCACAG
GTTCCCTGGC TACACGTTGA CGGTAACCGG ATCAAAGATT CCAGTGGTAA CAATATCACC
TTGAGAGGTG TGTCCATCAT TGCGCCGGAG CATAATAACG AGTGTACGAC GTGTAACACC
AAACCGATCA GCGAAATGCT GGAATGGCAG GCAGATGCCG GCAGGGACTG GCAGTCACGC
GTTGTTCGTC TCCAGGTCAC CTGTGCAAAG GTGAGTGATC CTGTACAGAG CTTTACTGAT
ATTATCGATC CTTATGTACA ACAGGCTATT GCAAAGGGAC TATATATTAT CGTAGACCTC
CATTTTGTCT CGAATTATGG GCCAGGCGGC GTCCCACAGA TATTTGTAAT GAATTTCTGG
AAGTACGTAG CCCCGAAGTA TGCCAATGTA CCTAACGTAC TGTTTGAGGT ATATAATGAA
CCTATCAATC CGGATGTATG GATGACTTGG AAAAGTTATA TACAGCCAGT GATCGATACG
ATCAGAGCAG TAGCACCCCA AAATATCATC CTGGTGGGTG GTCCACAGTG GAGTACAAGG
GTAAACAGTG CTGCAGCTAA TCCTATAGTA GGTGCCAATC TGGTATATGT ATATCATATT
TACCCTAATC AGGGCGCTGC AACCACGACC AATCTGAATT CGAAATTCGG TACCGCTGCG
CAGACAATTC CTGTGATGGT CACTGAATTT GGCTGGAATG ACAACAGCAA TTATTCGGAT
GGAGTAACGC ACGGCACCAC TAGTGCCTGG GGCTCGCCTT TCAGAACCTA CCTGGATGCG
CATCCGGAAA TCGGCTGGAC GGGATACATT TTTGACAACT TCTGGAAGCC ACAGTATTTT
GACTGGAGCT GGAATCTGAT GAACGGAGAA AACCAGGGAC AATTTATGCA GCAATGGCTT
GTCGATAAAA AGGGCGATGG GCAGGCACGG CCAGCACAAT TAAACGCTTA TAGTGTTTCG
CCAACTGCCG TCAATATCTC ATGGCCGGCT GATTCGACGG GTATTTTAAA ACGTGCTACA
ATAAGTGGAG GTCCATATAC CGTCATTGAT TCACTCACCG CAGCCAATTA TTCAGATACC
GGATTAACAG CTAATACAAC CTATTACTAT GCAATTAATG ATGGGCCGGA AATCTCAGTA
ACTACTGATA ATATCGGGTA TGCGCCAGAC TTGCCAATGT ACCTGACAAG TGATGCCGGC
AATCAGGTGA TTCAACTGAA TTGGTGGAAA AGTGCTGTAG GCGCCACCAG TTATAATGTA
TATAGATCAA CAGCATTGAC AGGCCCGTAT GAGTTGATTG CGGCAGGTGT GACCGGCATT
ACTTATACGG ACGCCAGTGT AACTAATGAC ATCACCTATT ATTACAGAAT TTCATCAGTG
AATACGGTAG AAAGTTCGCT GGGCCATGTC GTTGCAGATA TGCCTTCAGC AAATATGCTG
ATTGTAGACA ATATTGCTGC GGTAGCAACC GGGTCGTGGA CAGGTAGTAC CTCTGCACCA
GGCTATTATA GTACCAATTA TATGACAGAT GGGAATACGG GCGTCACAGG AGGAAAAAGC
ATCCGATTTA CACCGGATCT GCCTGTAGCT GGTGCGTATG ATGTGTATAT GCGTTGGGCA
TCTGGTACAA ACAGGGCATC GAATACACCT GTAGATGTTC ATTACGATGG TGGAAGCAAT
AGTTATCTGA TTAATCAGCA GATAGATAAT GGTGTCTGGA AATACCTGGG CACTTACAAT
TTTGCGGCGG GTACCACCGG AAATGTGTTG ATACGGAATG ACTCAGCAAA TGGTTATGTG
ATTGCCGATG CAGTAAAGTT TGTGTTGCAT CCGGATGAAA TTTCAGCACC TATACTCAAA
AAGGCGAGAA TAAATTCCCT TACCATTTAT CCTAATCCGG CCACAAATAC TATTCAGTTT
TCGGGTGTGG ACATAAACGG GAGGTTGGTC ACGATATATG ATTTGTCAGG TGTGAGGAAG
ATGATTATTA TTGCAAAACA ACAGACGCTG GATGTTTCAA CACTACAGCC AGGTATGTAT
TTTGTGACGA TTTCGGGAGC TAAAACATTG GCGGGTAGTT TTATAAAAAA TTGA
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| Protein sequence | MKPQNLLFVF LLFCFVAQAQ VPWLHVDGNR IKDSSGNNIT LRGVSIIAPE HNNECTTCNT
KPISEMLEWQ ADAGRDWQSR VVRLQVTCAK VSDPVQSFTD IIDPYVQQAI AKGLYIIVDL
HFVSNYGPGG VPQIFVMNFW KYVAPKYANV PNVLFEVYNE PINPDVWMTW KSYIQPVIDT
IRAVAPQNII LVGGPQWSTR VNSAAANPIV GANLVYVYHI YPNQGAATTT NLNSKFGTAA
QTIPVMVTEF GWNDNSNYSD GVTHGTTSAW GSPFRTYLDA HPEIGWTGYI FDNFWKPQYF
DWSWNLMNGE NQGQFMQQWL VDKKGDGQAR PAQLNAYSVS PTAVNISWPA DSTGILKRAT
ISGGPYTVID SLTAANYSDT GLTANTTYYY AINDGPEISV TTDNIGYAPD LPMYLTSDAG
NQVIQLNWWK SAVGATSYNV YRSTALTGPY ELIAAGVTGI TYTDASVTND ITYYYRISSV
NTVESSLGHV VADMPSANML IVDNIAAVAT GSWTGSTSAP GYYSTNYMTD GNTGVTGGKS
IRFTPDLPVA GAYDVYMRWA SGTNRASNTP VDVHYDGGSN SYLINQQIDN GVWKYLGTYN
FAAGTTGNVL IRNDSANGYV IADAVKFVLH PDEISAPILK KARINSLTIY PNPATNTIQF
SGVDINGRLV TIYDLSGVRK MIIIAKQQTL DVSTLQPGMY FVTISGAKTL AGSFIKN
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